Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AACJ17_RS11850 Genome accession   NZ_AP029010
Coordinates   2525035..2525868 (+) Length   277 a.a.
NCBI ID   WP_016721789.1    Uniprot ID   A0ABX7ZTT2
Organism   Ralstonia pseudosolanacearum strain MAFF 301524     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2520035..2530868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACJ17_RS11830 (MAFF301524_23310) phaC 2520770..2522566 (-) 1797 WP_011001573.1 class I poly(R)-hydroxyalkanoic acid synthase -
  AACJ17_RS11835 (MAFF301524_23320) - 2522850..2523080 (+) 231 WP_016721791.1 hypothetical protein -
  AACJ17_RS11840 (MAFF301524_23330) pgeF 2523120..2523923 (-) 804 WP_019718721.1 peptidoglycan editing factor PgeF -
  AACJ17_RS11845 (MAFF301524_23340) - 2523907..2525019 (-) 1113 WP_020832112.1 RluA family pseudouridine synthase -
  AACJ17_RS11850 (MAFF301524_23350) comL 2525035..2525868 (+) 834 WP_016721789.1 outer membrane protein assembly factor BamD Machinery gene
  AACJ17_RS11855 (MAFF301524_23360) - 2525946..2528087 (-) 2142 WP_011001568.1 ATP-dependent DNA helicase -
  AACJ17_RS11860 (MAFF301524_23370) - 2528167..2528370 (-) 204 WP_011001567.1 DUF465 domain-containing protein -
  AACJ17_RS11865 (MAFF301524_23380) - 2528410..2529129 (-) 720 WP_043885763.1 hypothetical protein -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 31455.54 Da        Isoelectric Point: 8.6499

>NTDB_id=97275 AACJ17_RS11850 WP_016721789.1 2525035..2525868(+) (comL) [Ralstonia pseudosolanacearum strain MAFF 301524]
MSVTSMKLARIRARIGAVLAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGP
FAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDA
FKTLITRFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALG
MKDLRDDTERIIKQNYPNSDFLLYGQRKKAKPWYQWW

Nucleotide


Download         Length: 834 bp        

>NTDB_id=97275 AACJ17_RS11850 WP_016721789.1 2525035..2525868(+) (comL) [Ralstonia pseudosolanacearum strain MAFF 301524]
ATGTCGGTCACGAGCATGAAGCTGGCGCGCATTCGCGCGCGAATCGGAGCGGTATTGGCGGCGGGCGTTGCATGCCTCGC
GATCTCGGCCTGCGGCATCATGCCGGAACAACAGGACGAGACCGCAGGCTGGTCGGCCAACAAATTATATTCGGAAGCGA
AGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGCTCGAGAGCCGCTATCCGTTCGGGCCC
TTTGCCCAGCAGGCGCAGATCGAAACCGCCTACGCCAATTACAAGGACGGCGAAACCGCCGCCGCGCTGGCTGCGGTCGA
TCGCTTCATCCAGCTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCTCAAGGGCCTGATCAATTTCAACGACA
ACCTGGGCTGGCTGGGCCGCTTCTCCAACCAGGACCTGAGCGAGCGCGATCCGAAGGCGGCCCGCGCCGCCTACGATGCG
TTCAAGACGCTGATCACGCGTTTCCCGAACAGCAAGTACGCGCCGGACGCCGCGCAGCGCATGCAGTACATCGTCAACGC
GATGGCCGAGCATGAAGTGCAGGCCGCCCGCTACTACTACCGCCGCGGTGCCTACCTGGCCGCCACCAACCGCGCGCAGG
AAGCCATCAAGGATTACGATCGCGCGCCGGCCGTGGAAGAAGGGCTGTACATCATGATGAAGTCCTACGAAGCGCTTGGC
ATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAACTATCCGAACAGCGATTTCCTGCTGTACGGACAGCG
CAAGAAGGCCAAGCCGTGGTACCAGTGGTGGTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(46-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.348

95.307

0.451
  comL Neisseria gonorrhoeae MS11

45.833

95.307

0.437

Multiple sequence alignment