Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AABD45_RS14870 Genome accession   NZ_CP150831
Coordinates   3189702..3190214 (+) Length   170 a.a.
NCBI ID   WP_038940290.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3184702..3195214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS14850 (AABD45_15385) - 3184889..3187402 (-) 2514 WP_406849099.1 penicillin-binding protein 1A -
  AABD45_RS14855 (AABD45_15390) pilM 3187542..3188549 (+) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  AABD45_RS14860 (AABD45_15395) pilN 3188539..3189129 (+) 591 WP_038940289.1 PilN domain-containing protein Machinery gene
  AABD45_RS14865 (AABD45_15400) pilO 3189122..3189712 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  AABD45_RS14870 (AABD45_15405) pilP 3189702..3190214 (+) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  AABD45_RS14875 (AABD45_15410) pilQ 3190228..3192018 (+) 1791 WP_045595641.1 type IV pilus secretin PilQ Machinery gene
  AABD45_RS14880 (AABD45_15415) aroK 3192220..3192738 (+) 519 WP_011079357.1 shikimate kinase AroK -
  AABD45_RS14885 (AABD45_15420) aroB 3192771..3193862 (+) 1092 WP_011079358.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19048.16 Da        Isoelectric Point: 10.2810

>NTDB_id=972743 AABD45_RS14870 WP_038940290.1 3189702..3190214(+) (pilP) [Vibrio vulnificus strain Per1]
MRSSLSLVAVLILLSGCRANTEPMEGFIRQVESEARQEMAKLQPEREYIPIDYLARENRRPFELPKEAVIASQPVVKKDC
WQPPSRAKNGKLERYPLSQLRLKGVMGSGNTIAGLVQTPQGKVEKVHPGQFIGQNNGKVTVVTPSYILINETLPDGLGCW
QQRKVRLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=972743 AABD45_RS14870 WP_038940290.1 3189702..3190214(+) (pilP) [Vibrio vulnificus strain Per1]
ATGAGAAGTAGTTTATCGCTCGTCGCTGTGCTGATCTTGCTATCGGGTTGTCGAGCGAATACCGAACCGATGGAAGGTTT
TATCCGCCAAGTTGAATCGGAAGCGCGTCAAGAAATGGCCAAGTTACAACCAGAGCGTGAGTACATCCCGATTGATTACT
TAGCTCGAGAAAATCGCCGTCCTTTTGAGTTACCTAAGGAAGCCGTGATTGCCTCTCAACCTGTCGTTAAGAAAGACTGC
TGGCAGCCACCATCGCGGGCTAAAAATGGCAAGTTGGAGCGCTATCCACTTAGCCAATTACGTCTGAAAGGGGTGATGGG
GAGTGGCAATACCATTGCCGGTCTCGTACAGACCCCTCAAGGCAAAGTGGAGAAAGTACACCCAGGGCAATTTATCGGCC
AGAACAATGGCAAAGTGACCGTAGTAACGCCGTCTTACATATTGATCAATGAAACCCTTCCTGATGGTTTAGGTTGCTGG
CAGCAACGTAAAGTCAGACTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

64.072

98.235

0.629
  pilP Vibrio cholerae strain A1552

59.375

94.118

0.559

Multiple sequence alignment