Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AABD45_RS14860 | Genome accession | NZ_CP150831 |
| Coordinates | 3188539..3189129 (+) | Length | 196 a.a. |
| NCBI ID | WP_038940289.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain Per1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3183539..3194129
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABD45_RS14845 (AABD45_15380) | oxyR | 3183921..3184820 (+) | 900 | WP_026050199.1 | DNA-binding transcriptional regulator OxyR | - |
| AABD45_RS14850 (AABD45_15385) | - | 3184889..3187402 (-) | 2514 | WP_406849099.1 | penicillin-binding protein 1A | - |
| AABD45_RS14855 (AABD45_15390) | pilM | 3187542..3188549 (+) | 1008 | WP_017419656.1 | type IV pilus assembly protein PilM | Machinery gene |
| AABD45_RS14860 (AABD45_15395) | pilN | 3188539..3189129 (+) | 591 | WP_038940289.1 | PilN domain-containing protein | Machinery gene |
| AABD45_RS14865 (AABD45_15400) | pilO | 3189122..3189712 (+) | 591 | WP_011079354.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AABD45_RS14870 (AABD45_15405) | pilP | 3189702..3190214 (+) | 513 | WP_038940290.1 | pilus assembly protein PilP | Machinery gene |
| AABD45_RS14875 (AABD45_15410) | pilQ | 3190228..3192018 (+) | 1791 | WP_045595641.1 | type IV pilus secretin PilQ | Machinery gene |
| AABD45_RS14880 (AABD45_15415) | aroK | 3192220..3192738 (+) | 519 | WP_011079357.1 | shikimate kinase AroK | - |
| AABD45_RS14885 (AABD45_15420) | aroB | 3192771..3193862 (+) | 1092 | WP_011079358.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22658.89 Da Isoelectric Point: 7.6441
>NTDB_id=972741 AABD45_RS14860 WP_038940289.1 3188539..3189129(+) (pilN) [Vibrio vulnificus strain Per1]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSSFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSSFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
Nucleotide
Download Length: 591 bp
>NTDB_id=972741 AABD45_RS14860 WP_038940289.1 3188539..3189129(+) (pilN) [Vibrio vulnificus strain Per1]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTCGGTATTCAGTGGGGTATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAGCTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCAGGTATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCTCCTTCCTGAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTCGGTATTCAGTGGGGTATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAGCTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCAGGTATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCTCCTTCCTGAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
67.956 |
92.347 |
0.628 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
90.306 |
0.571 |