Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ACLZ0G_RS14555 Genome accession   NZ_CP178552
Coordinates   2949467..2950123 (-) Length   218 a.a.
NCBI ID   WP_022645829.1    Uniprot ID   -
Organism   Escherichia coli strain WWCOL-236     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2944467..2955123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ0G_RS14520 (ACLZ0G_14520) - 2944533..2945621 (-) 1089 Protein_2834 IS3 family transposase -
  ACLZ0G_RS14525 (ACLZ0G_14525) - 2945694..2946335 (+) 642 Protein_2835 hypothetical protein -
  ACLZ0G_RS14545 (ACLZ0G_14545) pgsA 2947033..2947581 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLZ0G_RS14550 (ACLZ0G_14550) uvrC 2947638..2949470 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ACLZ0G_RS14555 (ACLZ0G_14555) letA 2949467..2950123 (-) 657 WP_022645829.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ACLZ0G_RS14560 (ACLZ0G_14560) yecU 2950419..2950595 (+) 177 WP_001307856.1 protein YecU -
  ACLZ0G_RS14565 (ACLZ0G_14565) yecF 2950582..2950806 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  ACLZ0G_RS14570 (ACLZ0G_14570) sdiA 2950873..2951595 (-) 723 WP_001154255.1 transcriptional regulator SdiA -
  ACLZ0G_RS14575 (ACLZ0G_14575) tcyN 2951825..2952577 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ACLZ0G_RS14580 (ACLZ0G_14580) tcyL 2952574..2953242 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  ACLZ0G_RS14585 (ACLZ0G_14585) dcyD 2953257..2954243 (-) 987 WP_001128235.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23938.73 Da        Isoelectric Point: 6.9612

>NTDB_id=972423 ACLZ0G_RS14555 WP_022645829.1 2949467..2950123(-) (letA) [Escherichia coli strain WWCOL-236]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIAYDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=972423 ACLZ0G_RS14555 WP_022645829.1 2949467..2950123(-) (letA) [Escherichia coli strain WWCOL-236]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACTGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTATGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482

Multiple sequence alignment