Detailed information NTG0097241

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACJ17_RS03360
• Genome accession: NZ_AP029010
• Coordinates: 712604..713485 (-)
• Length: 293 a.a.
• NCBI ID: WP_029240316.1
• Uniprot ID: A0ABX7ZX66
• Organism: Ralstonia pseudosolanacearum strain MAFF 301524
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 707604..718485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACJ17_RS03330 (MAFF301524_06460)	argJ	708314..709543 (+)	1230	WP_011002739.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
AACJ17_RS03335 (MAFF301524_06470)	-	709559..710443 (+)	885	WP_019718219.1	ATP-binding protein	-
AACJ17_RS03340 (MAFF301524_06480)	-	710421..710882 (+)	462	WP_118887908.1	NUDIX domain-containing protein	-
AACJ17_RS03345 (MAFF301524_06490)	yacG	710875..711090 (-)	216	WP_011002736.1	DNA gyrase inhibitor YacG	-
AACJ17_RS03350 (MAFF301524_06500)	zapD	711101..711859 (-)	759	WP_016723794.1	cell division protein ZapD	-
AACJ17_RS03355 (MAFF301524_06510)	coaE	711977..712591 (-)	615	WP_019718221.1	dephospho-CoA kinase	-
AACJ17_RS03360 (MAFF301524_06520)	pilD	712604..713485 (-)	882	WP_029240316.1	A24 family peptidase	Machinery gene
AACJ17_RS03365 (MAFF301524_06530)	pilC	713488..714753 (-)	1266	WP_019718222.1	type II secretion system F family protein	Machinery gene
AACJ17_RS03370 (MAFF301524_06540)	pilF	714798..716525 (-)	1728	WP_016723793.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AACJ17_RS03375 (MAFF301524_06550)	-	716773..718050 (-)	1278	WP_016723792.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31573.54 Da
• Isoelectric Point: 8.3415

>NTDB_id=97241 AACJ17_RS03360 WP_029240316.1 712604..713485(-) (pilD) [Ralstonia pseudosolanacearum strain MAFF 301524]
MPGMFVIPTLAQLPAWFVIGAGTLLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHPEPYNLVVPRSACPSCGH
QIKAVENIPVLSWLALRGRCSACKTPISWRYPAVELVTGVLTGACLWHFGPTWVAVASAALLWFLIAGSMIDADTQLLPD
AITQPLLWLGLLVNLFSMFARLPDAVIGATAGYLFLWAIYWAYKLLRGREGMGYGDFKLMGALGAWFGWQALPLLVLLSS
VVGLVFGVVRIARGATSESPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=97241 AACJ17_RS03360 WP_029240316.1 712604..713485(-) (pilD) [Ralstonia pseudosolanacearum strain MAFF 301524]
ATGCCCGGAATGTTCGTCATTCCCACGCTGGCGCAACTGCCGGCGTGGTTCGTGATCGGCGCGGGGACGCTGCTGGGCTT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATTCACCGCCTGCCGCGCATGATCGAGCGCGAAGAGGCCAACTACATCGCCG
AGCTGCGCAACGAACCGCTGCCGCATCCCGAGCCGTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAGGCGGTCGAGAACATCCCGGTGCTGAGCTGGCTGGCGTTGCGCGGCCGCTGCAGCGCCTGCAAGACCCCCAT
CTCCTGGCGCTATCCCGCCGTGGAGCTGGTGACCGGCGTGCTGACCGGCGCCTGCCTGTGGCACTTCGGACCGACCTGGG
TAGCGGTGGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGGCTCGATGATCGACGCCGACACGCAACTCCTGCCCGAT
GCCATCACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCAGCATGTTCGCGCGGCTGCCGGACGCGGTAAT
CGGCGCGACGGCGGGGTATCTGTTCCTGTGGGCCATCTACTGGGCCTATAAGCTCCTGCGCGGCCGGGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGGCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGCTGCTGGTGCTGCTGTCGTCG
GTGGTCGGCCTGGTGTTCGGGGTGGTGCGCATCGCGCGCGGCGCCACGAGCGAATCGCCGTTCTCGTTCGGCCCGTTCAT
CGCGGGTGCCGGCGTGATCGCGCTGCTGGCCGGCCCGCAACTGGTGGCGCTGACGGGGCTCGCGCCACTGCTGGCGCGGT
AA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.453	90.444	0.474
pilD	Vibrio campbellii strain DS40M4	48.736	94.539	0.461
pilD	Neisseria gonorrhoeae MS11	48.881	91.468	0.447
pilD	Acinetobacter nosocomialis M2	45.865	90.785	0.416
pilD	Acinetobacter baumannii D1279779	45.865	90.785	0.416