Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   WOC61_RS04205 Genome accession   NZ_CP150751
Coordinates   828707..829693 (-) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22698     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 823707..834693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC61_RS04180 (WOC61_04180) - 823967..824314 (-) 348 WP_001242101.1 hypothetical protein -
  WOC61_RS04185 (WOC61_04185) - 824500..825093 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  WOC61_RS04190 (WOC61_04190) - 825197..825562 (+) 366 WP_000214065.1 truncated hemoglobin YjbI -
  WOC61_RS04195 (WOC61_04195) yjbH 825585..826391 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  WOC61_RS04200 (WOC61_04200) pepF 826851..828659 (-) 1809 WP_000082731.1 oligoendopeptidase F -
  WOC61_RS04205 (WOC61_04205) coiA 828707..829693 (-) 987 WP_000959287.1 competence protein CoiA Machinery gene
  WOC61_RS04210 (WOC61_04210) mecA 829814..830533 (-) 720 WP_001217730.1 adaptor protein MecA -
  WOC61_RS04215 (WOC61_04215) spxA 830904..831299 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  WOC61_RS04220 (WOC61_04220) trpS 831594..832583 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  WOC61_RS04225 (WOC61_04225) opp4C 832625..833506 (-) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  WOC61_RS04230 (WOC61_04230) opp4B 833518..834480 (-) 963 WP_000593417.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=971789 WOC61_RS04205 WP_000959287.1 828707..829693(-) (coiA) [Staphylococcus aureus strain TUM22698]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=971789 WOC61_RS04205 WP_000959287.1 828707..829693(-) (coiA) [Staphylococcus aureus strain TUM22698]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment