Detailed information NTG0971625

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACLRDL_RS10200
• Genome accession: NZ_CP178387
• Coordinates: 2246982..2248262 (-)
• Length: 426 a.a.
• NCBI ID: WP_000130333.1
• Uniprot ID: -
• Organism: Vibrio cholerae isolate CTMA_1842
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2241982..2253262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLRDL_RS10185 (ACLRDL_10185)	ppiD	2242031..2243890 (-)	1860	WP_000969322.1	peptidylprolyl isomerase	-
ACLRDL_RS10190 (ACLRDL_10190)	-	2244043..2244315 (-)	273	WP_001044516.1	HU family DNA-binding protein	-
ACLRDL_RS10195 (ACLRDL_10195)	lon	2244499..2246859 (-)	2361	WP_001047610.1	endopeptidase La	-
ACLRDL_RS10200 (ACLRDL_10200)	clpX	2246982..2248262 (-)	1281	WP_000130333.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACLRDL_RS10205 (ACLRDL_10205)	clpP	2248342..2248968 (-)	627	WP_000121678.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ACLRDL_RS10210 (ACLRDL_10210)	tig	2249074..2250375 (-)	1302	WP_001198446.1	trigger factor	-
ACLRDL_RS10215 (ACLRDL_10215)	-	2250666..2250884 (-)	219	WP_001881672.1	hypothetical protein	-
ACLRDL_RS10220 (ACLRDL_10220)	-	2250874..2252667 (+)	1794	WP_001908565.1	sensor histidine kinase	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46520.26 Da
• Isoelectric Point: 4.7780

>NTDB_id=971625 ACLRDL_RS10200 WP_000130333.1 2246982..2248262(-) (clpX) [Vibrio cholerae isolate CTMA_1842]
MTDKSKEGGSSKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESTALPTPRKIREHLDDYVI
GQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKYGLIPEFIGRLPVTATLTELD
EAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAIAAKAMKRKTGARGLRSILEAVLLETMYELPSMEEVSKVVI
DESVINGESAPLLIYSANESQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=971625 ACLRDL_RS10200 WP_000130333.1 2246982..2248262(-) (clpX) [Vibrio cholerae isolate CTMA_1842]
ATGACAGACAAAAGCAAAGAGGGCGGTAGTAGTAAACTGCTGTACTGCTCTTTCTGTGGCAAAAGCCAGCACGAAGTTCG
CAAACTGATCGCAGGTCCGTCCGTGTATATTTGTGATGAGTGCGTTGATTTATGCAACGACATCATCCGCGAAGAGATCA
AAGATGTTCTGCCAAAAAAGGAATCAACGGCGTTACCGACGCCAAGAAAGATTCGTGAACATCTCGACGATTATGTGATT
GGTCAAGAACACGCCAAAAAAGTGCTAGCCGTTGCGGTATATAACCACTACAAGCGTTTACGTAATGGTGATACGACTAG
CGAAGGCGTTGAGCTGGGCAAGAGTAACATTTTGCTGATTGGCCCAACGGGTAGCGGTAAAACACTACTGGCTGAAACGC
TGGCGCGTTTGCTGGATGTGCCATTTACCATGGCGGATGCGACCACATTAACCGAAGCGGGTTATGTGGGCGAAGATGTA
GAAAATATCATTCAAAAGCTGCTGCAAAAATGCGATTACGATGTTGCAAAAGCGGAGCGTGGTATCGTCTATATCGATGA
AATTGACAAAATTTCTCGTAAGTCTGAAAACCCATCCATCACACGTGACGTGTCGGGTGAAGGGGTTCAGCAAGCGCTGT
TAAAACTGATTGAAGGTACAGTTGCTTCGGTTCCACCACAAGGTGGCCGTAAACATCCTCAGCAGGAATTCCTGCAAGTC
GACACCTCAAAAATCCTATTTATCTGTGGTGGCGCGTTTGCTGGCCTAGATAAAGTGATTGAACAGCGTGTTGCGACAGG
GACTGGTATCGGTTTTGGCGCGGATGTGCGTTCTAAAGACAACAGCAAAACCTTGAGCGAACTGTTTACTCAGGTTGAAC
CTGAAGATTTGGTGAAATACGGTTTGATCCCAGAGTTCATTGGTCGTCTGCCTGTTACGGCAACGCTGACTGAACTGGAT
GAAGCGGCATTGATTCAAATTCTGTGTGAACCAAAGAATGCACTGACCAAACAGTATGCGGCGTTGTTTGAACTGGAAAA
CGTTGATCTGGAGTTTCGTGAAGATGCGCTGAAAGCGATTGCCGCTAAAGCGATGAAGCGTAAAACCGGTGCACGTGGTC
TACGTTCAATCCTTGAAGCAGTTCTACTGGAAACCATGTATGAACTGCCTTCAATGGAAGAGGTCAGCAAGGTGGTGATT
GATGAATCTGTGATCAACGGAGAGTCTGCACCGCTACTGATTTACAGCGCTAATGAGAGCCAAGCCGCTGGTGCGGAGTA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.706	94.366	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.333	95.07	0.507