Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   WOC46_RS07575 Genome accession   NZ_CP150733
Coordinates   1524485..1524931 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22741     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519485..1529931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC46_RS07540 (WOC46_07540) - 1519979..1520182 (+) 204 WP_000087561.1 YqgQ family protein -
  WOC46_RS07545 (WOC46_07545) - 1520179..1521165 (+) 987 WP_000161314.1 ROK family glucokinase -
  WOC46_RS07550 (WOC46_07550) - 1521165..1521494 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  WOC46_RS07555 (WOC46_07555) - 1521491..1522114 (+) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  WOC46_RS07560 (WOC46_07560) comGA 1522166..1523140 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  WOC46_RS07565 (WOC46_07565) comGB 1523112..1524182 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  WOC46_RS07570 (WOC46_07570) comGC 1524196..1524507 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  WOC46_RS07575 (WOC46_07575) comGD 1524485..1524931 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  WOC46_RS07580 (WOC46_07580) comGE 1524918..1525217 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  WOC46_RS07585 (WOC46_07585) comGF 1525135..1525632 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  WOC46_RS07590 (WOC46_07590) - 1525729..1525875 (+) 147 WP_001789879.1 hypothetical protein -
  WOC46_RS07595 (WOC46_07595) - 1525865..1526389 (+) 525 WP_001015121.1 shikimate kinase -
  WOC46_RS07600 (WOC46_07600) gcvT 1526548..1527639 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  WOC46_RS07605 (WOC46_07605) gcvPA 1527659..1529005 (+) 1347 WP_117200971.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=971399 WOC46_RS07575 WP_001788899.1 1524485..1524931(+) (comGD) [Staphylococcus aureus strain TUM22741]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=971399 WOC46_RS07575 WP_001788899.1 1524485..1524931(+) (comGD) [Staphylococcus aureus strain TUM22741]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment