Detailed information NTG0097107

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACK08_RS16765
• Genome accession: NZ_AP029004
• Coordinates: 3558181..3559062 (+)
• Length: 293 a.a.
• NCBI ID: WP_029240316.1
• Uniprot ID: A0ABX7ZX66
• Organism: Ralstonia pseudosolanacearum strain MAFF 211519
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3553181..3564062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACK08_RS16750 (MAFF211519_32920)	-	3553616..3554893 (+)	1278	WP_016723792.1	HlyC/CorC family transporter	-
AACK08_RS16755 (MAFF211519_32930)	pilB	3555141..3556868 (+)	1728	WP_071507140.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AACK08_RS16760 (MAFF211519_32940)	pilC	3556913..3558178 (+)	1266	WP_011002732.1	type II secretion system F family protein	Machinery gene
AACK08_RS16765 (MAFF211519_32950)	pilD	3558181..3559062 (+)	882	WP_029240316.1	A24 family peptidase	Machinery gene
AACK08_RS16770 (MAFF211519_32960)	coaE	3559075..3559689 (+)	615	WP_011002734.1	dephospho-CoA kinase	-
AACK08_RS16775 (MAFF211519_32970)	zapD	3559807..3560565 (+)	759	WP_011002735.1	cell division protein ZapD	-
AACK08_RS16780 (MAFF211519_32980)	yacG	3560576..3560791 (+)	216	WP_011002736.1	DNA gyrase inhibitor YacG	-
AACK08_RS16785 (MAFF211519_32990)	-	3560784..3561245 (-)	462	WP_011002737.1	NUDIX domain-containing protein	-
AACK08_RS16790 (MAFF211519_33000)	-	3561223..3562107 (-)	885	WP_011002738.1	ATP-binding protein	-
AACK08_RS16795 (MAFF211519_33010)	argJ	3562123..3563352 (-)	1230	WP_011002739.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31573.54 Da
• Isoelectric Point: 8.3415

>NTDB_id=97107 AACK08_RS16765 WP_029240316.1 3558181..3559062(+) (pilD) [Ralstonia pseudosolanacearum strain MAFF 211519]
MPGMFVIPTLAQLPAWFVIGAGTLLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHPEPYNLVVPRSACPSCGH
QIKAVENIPVLSWLALRGRCSACKTPISWRYPAVELVTGVLTGACLWHFGPTWVAVASAALLWFLIAGSMIDADTQLLPD
AITQPLLWLGLLVNLFSMFARLPDAVIGATAGYLFLWAIYWAYKLLRGREGMGYGDFKLMGALGAWFGWQALPLLVLLSS
VVGLVFGVVRIARGATSESPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=97107 AACK08_RS16765 WP_029240316.1 3558181..3559062(+) (pilD) [Ralstonia pseudosolanacearum strain MAFF 211519]
ATGCCCGGAATGTTCGTCATTCCCACGCTGGCGCAACTGCCGGCGTGGTTCGTGATCGGCGCGGGGACGCTGCTGGGCTT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATTCACCGCCTGCCGCGCATGATCGAGCGCGAAGAGGCCAACTACATCGCCG
AGCTGCGCAACGAACCGCTGCCGCATCCCGAGCCGTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAGGCGGTCGAGAACATCCCGGTGCTGAGCTGGCTGGCGTTGCGCGGCCGCTGCAGCGCCTGCAAGACCCCCAT
CTCCTGGCGCTATCCCGCCGTGGAGCTGGTGACCGGCGTGCTGACCGGCGCCTGCCTGTGGCACTTCGGACCGACCTGGG
TAGCGGTGGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGGCTCGATGATCGACGCCGACACGCAGCTCCTGCCCGAT
GCCATCACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCAGCATGTTCGCGCGGCTGCCGGACGCGGTAAT
CGGCGCGACGGCGGGGTATCTGTTCCTGTGGGCCATCTACTGGGCCTATAAGCTCCTGCGCGGCCGGGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGGCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGCTGCTGGTGCTGCTGTCGTCG
GTGGTCGGCCTGGTGTTCGGGGTGGTGCGCATCGCGCGCGGCGCCACGAGCGAATCGCCGTTCTCGTTCGGCCCGTTCAT
CGCGGGTGCCGGCGTAATCGCGCTGCTGGCCGGCCCGCAACTGGTGGCGCTGACGGGGCTCGCGCCACTGCTGGCGCGGT
AA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.453	90.444	0.474
pilD	Vibrio campbellii strain DS40M4	48.736	94.539	0.461
pilD	Neisseria gonorrhoeae MS11	48.881	91.468	0.447
pilD	Acinetobacter nosocomialis M2	45.865	90.785	0.416
pilD	Acinetobacter baumannii D1279779	45.865	90.785	0.416