Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AACK08_RS11145 Genome accession   NZ_AP029004
Coordinates   2385115..2385948 (+) Length   277 a.a.
NCBI ID   WP_016721789.1    Uniprot ID   A0ABX7ZTT2
Organism   Ralstonia pseudosolanacearum strain MAFF 211519     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2380115..2390948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK08_RS11120 (MAFF211519_21950) phaC 2380850..2382646 (-) 1797 WP_071507220.1 class I poly(R)-hydroxyalkanoic acid synthase -
  AACK08_RS11125 - 2382840..2382913 (+) 74 Protein_2179 twin-arginine translocation signal domain-containing protein -
  AACK08_RS11130 (MAFF211519_21960) - 2382930..2383160 (+) 231 WP_058907553.1 hypothetical protein -
  AACK08_RS11135 (MAFF211519_21970) pgeF 2383200..2384003 (-) 804 WP_011001571.1 peptidoglycan editing factor PgeF -
  AACK08_RS11140 (MAFF211519_21980) - 2383987..2385099 (-) 1113 WP_020832112.1 RluA family pseudouridine synthase -
  AACK08_RS11145 (MAFF211519_21990) comL 2385115..2385948 (+) 834 WP_016721789.1 outer membrane protein assembly factor BamD Machinery gene
  AACK08_RS11150 (MAFF211519_22000) - 2386026..2388167 (-) 2142 WP_011001568.1 ATP-dependent DNA helicase -
  AACK08_RS11155 (MAFF211519_22010) - 2388247..2388450 (-) 204 WP_011001567.1 DUF465 domain-containing protein -
  AACK08_RS11160 (MAFF211519_22020) - 2388490..2389206 (-) 717 WP_071507219.1 hypothetical protein -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 31455.54 Da        Isoelectric Point: 8.6499

>NTDB_id=97090 AACK08_RS11145 WP_016721789.1 2385115..2385948(+) (comL) [Ralstonia pseudosolanacearum strain MAFF 211519]
MSVTSMKLARIRARIGAVLAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGP
FAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDA
FKTLITRFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALG
MKDLRDDTERIIKQNYPNSDFLLYGQRKKAKPWYQWW

Nucleotide


Download         Length: 834 bp        

>NTDB_id=97090 AACK08_RS11145 WP_016721789.1 2385115..2385948(+) (comL) [Ralstonia pseudosolanacearum strain MAFF 211519]
ATGTCGGTCACGAGCATGAAGCTGGCGCGCATTCGCGCGCGAATCGGAGCGGTATTGGCGGCGGGCGTTGCATGCCTCGC
GATCTCGGCCTGCGGCATCATGCCGGAACAACAGGACGAGACCGCAGGCTGGTCGGCCAACAAATTATATTCGGAAGCGA
AGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGCTCGAGAGCCGCTATCCGTTCGGGCCC
TTTGCCCAGCAGGCGCAGATCGAAACCGCCTACGCCAATTACAAGGACGGCGAAACCGCCGCCGCGCTGGCTGCGGTCGA
TCGCTTCATCCAGCTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCTCAAGGGCCTGATCAACTTCAACGACA
ACCTGGGCTGGCTGGGCCGCTTCTCCAACCAGGACCTGAGCGAGCGCGATCCGAAGGCGGCCCGCGCCGCCTACGATGCG
TTCAAGACGCTGATCACGCGTTTCCCGAACAGCAAGTACGCGCCGGACGCCGCGCAGCGCATGCAGTACATCGTCAACGC
GATGGCCGAGCATGAAGTGCAGGCCGCCCGCTACTACTACCGCCGCGGTGCCTACCTGGCCGCCACCAACCGCGCGCAGG
AAGCCATCAAGGATTACGATCGCGCGCCGGCCGTGGAAGAAGGGCTGTACATCATGATGAAGTCCTACGAAGCGCTTGGC
ATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAACTATCCGAACAGCGATTTCCTGCTGTACGGACAGCG
CAAGAAGGCCAAGCCGTGGTACCAGTGGTGGTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(46-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.348

95.307

0.451
  comL Neisseria gonorrhoeae MS11

45.833

95.307

0.437

Multiple sequence alignment