Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AACK08_RS05760 Genome accession   NZ_AP029004
Coordinates   1204930..1205298 (+) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum strain MAFF 211519     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199930..1210298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK08_RS05735 (MAFF211519_11370) - 1200421..1201047 (-) 627 WP_016723449.1 LemA family protein -
  AACK08_RS05740 (MAFF211519_11380) dapA 1201428..1202342 (+) 915 WP_071507572.1 4-hydroxy-tetrahydrodipicolinate synthase -
  AACK08_RS05745 (MAFF211519_11390) hemL 1202445..1203746 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AACK08_RS05750 (MAFF211519_11400) - 1203958..1204140 (+) 183 WP_003261842.1 rubredoxin -
  AACK08_RS05755 (MAFF211519_11410) pilG 1204455..1204898 (+) 444 WP_071615340.1 response regulator Regulator
  AACK08_RS05760 (MAFF211519_11420) pilH 1204930..1205298 (+) 369 WP_003269243.1 response regulator Machinery gene
  AACK08_RS05765 (MAFF211519_11430) - 1205357..1205902 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  AACK08_RS05770 (MAFF211519_11440) - 1206148..1208379 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=97074 AACK08_RS05760 WP_003269243.1 1204930..1205298(+) (pilH) [Ralstonia pseudosolanacearum strain MAFF 211519]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=97074 AACK08_RS05760 WP_003269243.1 1204930..1205298(+) (pilH) [Ralstonia pseudosolanacearum strain MAFF 211519]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434

Multiple sequence alignment