Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WIF35_RS13980 Genome accession   NZ_CP150631
Coordinates   2872529..2873503 (+) Length   324 a.a.
NCBI ID   WP_412478830.1    Uniprot ID   -
Organism   Azonexus sp. IMCC34839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2867529..2878503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIF35_RS13955 - 2868458..2868715 (-) 258 WP_412478825.1 YfhL family 4Fe-4S dicluster ferredoxin -
  WIF35_RS13960 coaD 2868733..2869227 (-) 495 WP_412478826.1 pantetheine-phosphate adenylyltransferase -
  WIF35_RS13965 rsmD 2869224..2869763 (-) 540 WP_412478827.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WIF35_RS13970 - 2869760..2871049 (-) 1290 WP_412478828.1 M16 family metallopeptidase -
  WIF35_RS13975 - 2871061..2872419 (-) 1359 WP_412478829.1 M16 family metallopeptidase -
  WIF35_RS13980 pilA 2872529..2873503 (+) 975 WP_412478830.1 signal recognition particle-docking protein FtsY Machinery gene
  WIF35_RS13985 - 2873509..2874159 (+) 651 WP_412478831.1 cell division ATP-binding protein FtsE -
  WIF35_RS13990 ftsX 2874156..2875055 (+) 900 WP_412478832.1 permease-like cell division protein FtsX -
  WIF35_RS13995 - 2875048..2876655 (+) 1608 WP_412478833.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35001.30 Da        Isoelectric Point: 6.8846

>NTDB_id=970733 WIF35_RS13980 WP_412478830.1 2872529..2873503(+) (pilA) [Azonexus sp. IMCC34839]
MFSFLKKSTPEPQAAAPAESAAAPSWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELETLLLTSDVGIEATTHLL
DELKKAAKRDKLETPEAIQKALADALLETLQPLEQPLDYTTHNPFVIMIAGVNGAGKTTSIGKLAKYFQNQGKSVLLAAG
DTFRAAAREQLQTWGERNNVTVIAQESGDPAAVIYDAIAAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKIDPT
GPHETLLVLDANIGQNALMQVKAFDKAINVTGLVVTKLDGTAKGGVVAAIARQCPKPIRFIGVGEQIDDLRPFSAKDFVD
ALFE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=970733 WIF35_RS13980 WP_412478830.1 2872529..2873503(+) (pilA) [Azonexus sp. IMCC34839]
ATGTTCAGTTTCCTGAAAAAATCCACGCCCGAGCCGCAAGCCGCGGCGCCGGCCGAAAGCGCGGCGGCTCCCTCCTGGCG
CGAGCGCCTGTTTAAGGGCCTGGCCAAGACGCGTGCCCAGTGGGGCGGTAAGCTCAAATCCATCTTTTCGCGCGGCAAGG
TCGACGACGAACTGCTCGAAGAACTCGAAACCCTGCTGCTGACTTCGGATGTTGGCATCGAGGCGACCACGCACCTGCTC
GACGAATTGAAGAAGGCGGCCAAGCGCGACAAGCTGGAAACGCCGGAAGCCATCCAGAAAGCGCTGGCCGATGCCCTACT
CGAAACCCTGCAGCCGCTCGAACAGCCGCTTGACTACACGACGCACAACCCTTTCGTGATCATGATTGCGGGCGTGAACG
GCGCCGGCAAGACGACCTCCATCGGCAAGCTGGCCAAGTATTTCCAGAATCAGGGCAAGAGCGTGCTGCTGGCTGCCGGC
GACACCTTCCGCGCCGCGGCCCGCGAGCAGTTGCAGACCTGGGGCGAGCGCAACAACGTGACCGTCATCGCCCAGGAGTC
GGGCGATCCGGCCGCCGTGATCTACGACGCCATCGCCGCCGCCAAGGCGCGCGGCATCGACATCGTGCTGGCCGACACGG
CCGGTCGCCTGCCGACCCAGTTGCACCTGATGGAAGAAATTGCCAAGGTCCGCCGCGTCATCCAGAAGATCGATCCGACC
GGCCCGCATGAGACCCTGCTCGTGCTCGATGCCAATATCGGGCAGAACGCGTTGATGCAGGTAAAGGCCTTCGACAAGGC
GATCAACGTCACCGGCCTGGTCGTTACCAAGCTCGACGGCACGGCCAAAGGCGGCGTCGTTGCTGCCATCGCTCGCCAGT
GTCCGAAGCCGATCCGTTTCATCGGCGTCGGCGAGCAGATCGACGACCTGCGTCCCTTCTCCGCCAAAGACTTCGTCGAC
GCCCTGTTCGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(42-106)

SRP54-type protein, GTPase domain (SRP54)

(124-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

64

92.593

0.593

Multiple sequence alignment