Detailed information NTG0970625

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: WHC13_RS20255
• Genome accession: NZ_CP150487
• Coordinates: 3845629..3846774 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain JNF2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3840629..3851774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHC13_RS20230 (WHC13_20230)	albF	3840645..3841925 (+)	1281	WP_003242974.1	pitrilysin family protein	-
WHC13_RS20235 (WHC13_20235)	albG	3841922..3842623 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
WHC13_RS20240 (WHC13_20240)	ywhL	3842629..3844005 (-)	1377	WP_003244415.1	YncE family protein	-
WHC13_RS20245 (WHC13_20245)	ywhK	3844044..3845399 (-)	1356	WP_003227552.1	YncE family protein	-
WHC13_RS20250 (WHC13_20250)	-	3845396..3845626 (-)	231	WP_009968328.1	hypothetical protein	-
WHC13_RS20255 (WHC13_20255)	rapF	3845629..3846774 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
WHC13_RS20260 (WHC13_20260)	phrF	3846758..3846877 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
WHC13_RS20265 (WHC13_20265)	ywhH	3846976..3847449 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
WHC13_RS20270 (WHC13_20270)	speB	3847481..3848353 (-)	873	WP_003227545.1	agmatinase	-
WHC13_RS20275 (WHC13_20275)	speE	3848414..3849244 (-)	831	WP_003227543.1	spermidine synthase	-
WHC13_RS20280 (WHC13_20280)	pbpG	3849446..3851521 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=970625 WHC13_RS20255 WP_003227549.1 3845629..3846774(+) (rapF) [Bacillus subtilis strain JNF2]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=970625 WHC13_RS20255 WP_003227549.1 3845629..3846774(+) (rapF) [Bacillus subtilis strain JNF2]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572