Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACLSTA_RS24800 Genome accession   NZ_CP178203
Coordinates   5026755..5027747 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain APEC17     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5021755..5032747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSTA_RS24775 (ACLSTA_24775) rbsD 5021879..5022298 (+) 420 WP_001318146.1 D-ribose pyranase -
  ACLSTA_RS24780 (ACLSTA_24780) rbsA 5022306..5023811 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ACLSTA_RS24785 (ACLSTA_24785) rbsC 5023816..5024781 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACLSTA_RS24790 (ACLSTA_24790) rbsB 5024806..5025696 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACLSTA_RS24795 (ACLSTA_24795) rbsK 5025822..5026751 (+) 930 WP_001361088.1 ribokinase -
  ACLSTA_RS24800 (ACLSTA_24800) cytR 5026755..5027747 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACLSTA_RS24805 (ACLSTA_24805) mdtD 5027713..5029140 (-) 1428 WP_001280857.1 multidrug transporter subunit MdtD -
  ACLSTA_RS24810 (ACLSTA_24810) yieP 5029163..5029855 (-) 693 WP_001131162.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=970626 ACLSTA_RS24800 WP_000224470.1 5026755..5027747(+) (cytR) [Escherichia coli strain APEC17]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=970626 ACLSTA_RS24800 WP_000224470.1 5026755..5027747(+) (cytR) [Escherichia coli strain APEC17]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAACTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment