Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOZ35_RS13170 Genome accession   NZ_CP150480
Coordinates   2655163..2655786 (-) Length   207 a.a.
NCBI ID   WP_010789256.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2650163..2660786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS13140 (SOZ35_13140) rpsT 2650457..2650723 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  SOZ35_RS13145 (SOZ35_13145) holA 2650738..2651781 (-) 1044 WP_010789253.1 DNA polymerase III subunit delta -
  SOZ35_RS13150 (SOZ35_13150) - 2651821..2651970 (-) 150 WP_010789254.1 hypothetical protein -
  SOZ35_RS13155 (SOZ35_13155) - 2652011..2652145 (+) 135 WP_003229983.1 YqzM family protein -
  SOZ35_RS13160 (SOZ35_13160) comEC 2652186..2654519 (-) 2334 WP_340639534.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SOZ35_RS13165 (SOZ35_13165) - 2654526..2655095 (-) 570 WP_340639535.1 ComE operon protein 2 -
  SOZ35_RS13170 (SOZ35_13170) comEA 2655163..2655786 (-) 624 WP_010789256.1 helix-hairpin-helix domain-containing protein Machinery gene
  SOZ35_RS13175 (SOZ35_13175) comER 2655870..2656691 (+) 822 WP_003325389.1 late competence protein ComER -
  SOZ35_RS13180 (SOZ35_13180) - 2656761..2657501 (-) 741 WP_003325388.1 class I SAM-dependent methyltransferase -
  SOZ35_RS13185 (SOZ35_13185) rsfS 2657498..2657854 (-) 357 WP_003325387.1 ribosome silencing factor -
  SOZ35_RS13190 (SOZ35_13190) yqeK 2657871..2658431 (-) 561 WP_088117608.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SOZ35_RS13195 (SOZ35_13195) - 2658421..2658990 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  SOZ35_RS13200 (SOZ35_13200) yhbY 2659002..2659292 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -
  SOZ35_RS13205 (SOZ35_13205) aroE 2659286..2660128 (-) 843 WP_216413429.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21961.72 Da        Isoelectric Point: 4.6181

>NTDB_id=970498 SOZ35_RS13170 WP_010789256.1 2655163..2655786(-) (comEA) [Bacillus atrophaeus strain TL401]
MNWFYQHKKIILTAGAAVIFIVILLNFPGAKKQEPVQQITASPDTAGTQVQQQESKGDADGEKIIIDIKGAVKHPGVYEL
KTGDRVSQAIEKAGGINSEADEKQVNLAELLQDGTVVYIPSEGEEPTQSAAANASVQNGAGKEALVNINTASLEELQAIS
GVGPSKAEAIIAYREENGKFQAVEDITNVSGIGEKSFEKIKSAITVK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=970498 SOZ35_RS13170 WP_010789256.1 2655163..2655786(-) (comEA) [Bacillus atrophaeus strain TL401]
ATGAATTGGTTTTACCAGCACAAAAAAATAATCTTAACGGCAGGTGCTGCTGTCATCTTCATCGTCATCCTGCTTAATTT
TCCCGGCGCAAAGAAGCAGGAGCCTGTTCAGCAAATCACAGCGTCGCCTGACACGGCGGGCACACAAGTTCAGCAGCAAG
AATCGAAAGGTGATGCTGACGGAGAAAAAATTATCATTGATATTAAAGGCGCTGTCAAACATCCGGGTGTTTACGAATTG
AAAACGGGAGACAGAGTTTCACAGGCTATCGAAAAAGCGGGAGGCATTAATTCGGAGGCTGATGAAAAACAAGTAAATTT
AGCTGAACTCCTGCAGGACGGCACTGTCGTGTACATTCCGAGTGAGGGGGAAGAGCCAACACAAAGCGCTGCCGCAAATG
CTTCTGTGCAAAACGGAGCAGGAAAAGAGGCTTTGGTTAATATCAATACAGCGTCATTAGAGGAACTGCAGGCTATTTCC
GGGGTCGGTCCGTCAAAAGCAGAAGCTATAATAGCTTATCGTGAAGAAAACGGAAAATTTCAAGCCGTTGAAGACATTAC
AAATGTCTCGGGAATCGGCGAAAAATCATTTGAGAAAATAAAATCAGCCATCACAGTTAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(66-120)

Helix-hairpin-helix motif (HHH_3)

(143-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

65.7

100

0.657

Multiple sequence alignment