Detailed information NTG0970412

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VUK78_RS13450
• Genome accession: NZ_CP150467
• Coordinates: 603370..604353 (+)
• Length: 327 a.a.
• NCBI ID: WP_340700201.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain NH-LM1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 598370..609353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VUK78_RS13415 (VUK78_13415)	ftsB	598376..598657 (+)	282	WP_005452106.1	cell division protein FtsB	-
VUK78_RS13420 (VUK78_13420)	ispD	598659..599369 (+)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VUK78_RS13425 (VUK78_13425)	ispF	599384..599860 (+)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VUK78_RS13430 (VUK78_13430)	truD	599906..600949 (+)	1044	WP_340700199.1	tRNA pseudouridine(13) synthase TruD	-
VUK78_RS13435 (VUK78_13435)	surE	600949..601725 (+)	777	WP_340700200.1	5'/3'-nucleotidase SurE	-
VUK78_RS13440 (VUK78_13440)	-	601725..602351 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VUK78_RS13445 (VUK78_13445)	-	602366..603289 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
VUK78_RS13450 (VUK78_13450)	rpoS	603370..604353 (+)	984	WP_340700201.1	RNA polymerase sigma factor RpoS	Regulator
VUK78_RS13455 (VUK78_13455)	mutS	604447..607008 (-)	2562	WP_340700202.1	DNA mismatch repair protein MutS	-
VUK78_RS13460 (VUK78_13460)	pncC	607094..607576 (+)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
VUK78_RS13465 (VUK78_13465)	recA	607778..608821 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37259.13 Da
• Isoelectric Point: 4.7765

>NTDB_id=970412 VUK78_RS13450 WP_340700201.1 603370..604353(+) (rpoS) [Vibrio harveyi strain NH-LM1]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSHGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=970412 VUK78_RS13450 WP_340700201.1 603370..604353(+) (rpoS) [Vibrio harveyi strain NH-LM1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTCACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTCAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856