NTDB

Overview

Name	tsaP	Type	Machinery gene
Locus tag	ACLFAG_RS00125	Genome accession	NZ_CP177247
Coordinates	28228..29253 (+)	Length	341 a.a.
NCBI ID	WP_003097294.1	Uniprot ID	A0A0H2ZJL6
Organism	Pseudomonas aeruginosa strain WYT
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 23228..34253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLFAG_RS00100 (ACLFAG_00100)	-	23416..23733 (-)	318	WP_003120685.1	tetratricopeptide repeat protein	-
ACLFAG_RS00105 (ACLFAG_00105)	trkA	23882..25255 (-)	1374	WP_003107053.1	Trk system potassium transporter TrkA	-
ACLFAG_RS00110 (ACLFAG_00110)	rsmB	25283..26587 (-)	1305	WP_003114643.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
ACLFAG_RS00115 (ACLFAG_00115)	fmt	26584..27528 (-)	945	WP_017001989.1	methionyl-tRNA formyltransferase	-
ACLFAG_RS00120 (ACLFAG_00120)	def	27583..28089 (-)	507	WP_003107059.1	peptide deformylase	-
ACLFAG_RS00125 (ACLFAG_00125)	tsaP	28228..29253 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
ACLFAG_RS00130 (ACLFAG_00130)	dprA	29388..30476 (+)	1089	WP_003123764.1	DNA-processing protein DprA	Machinery gene
ACLFAG_RS00135 (ACLFAG_00135)	-	30517..31074 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
ACLFAG_RS00140 (ACLFAG_00140)	-	31084..32061 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
ACLFAG_RS00145 (ACLFAG_00145)	hemF	32252..33169 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
ACLFAG_RS00150 (ACLFAG_00150)	aroE	33227..34051 (+)	825	WP_003097314.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 341 a.a. Molecular weight: 37586.01 Da Isoelectric Point: 9.3358

                                >NTDB_id=970100 ACLFAG_RS00125 WP_003097294.1 28228..29253(+) (tsaP) [Pseudomonas aeruginosa strain WYT]

MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV

DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA

RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP

GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL

SYALVLMASRPLSVTDRVQNP

Nucleotide

Download Length: 1026 bp

                                >NTDB_id=970100 ACLFAG_RS00125 WP_003097294.1 28228..29253(+) (tsaP) [Pseudomonas aeruginosa strain WYT]

ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA

TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC

CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC

GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC

GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA

AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC

CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA

AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA

CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC

GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT

CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG

ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG

AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393

Detailed information NTG0970100