Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHI53_RS16495 Genome accession   NZ_CP150304
Coordinates   3417299..3419707 (-) Length   802 a.a.
NCBI ID   WP_340371748.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3412299..3424707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI53_RS16470 (MHI53_16470) - 3413727..3414803 (-) 1077 WP_061143656.1 AI-2E family transporter -
  MHI53_RS16475 (MHI53_16475) - 3415033..3415248 (-) 216 WP_061143657.1 hypothetical protein -
  MHI53_RS16480 (MHI53_16480) - 3415238..3415696 (-) 459 WP_185113133.1 PRC-barrel domain-containing protein -
  MHI53_RS16485 (MHI53_16485) - 3415860..3416630 (-) 771 WP_340371746.1 TPM domain-containing protein -
  MHI53_RS16490 (MHI53_16490) - 3416630..3417196 (-) 567 WP_340371747.1 LemA family protein -
  MHI53_RS16495 (MHI53_16495) recD2 3417299..3419707 (-) 2409 WP_340371748.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHI53_RS16500 (MHI53_16500) - 3419745..3420410 (-) 666 WP_061143729.1 tetratricopeptide repeat protein -
  MHI53_RS16505 (MHI53_16505) mnmA 3420535..3421650 (-) 1116 WP_061143662.1 tRNA 2-thiouridine(34) synthase MnmA -
  MHI53_RS16510 (MHI53_16510) - 3421681..3422826 (-) 1146 WP_340371749.1 cysteine desulfurase family protein -
  MHI53_RS16515 (MHI53_16515) - 3422887..3423306 (-) 420 WP_057911634.1 Rrf2 family transcriptional regulator -
  MHI53_RS16520 (MHI53_16520) - 3423836..3424261 (+) 426 WP_340371750.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90445.17 Da        Isoelectric Point: 4.7736

>NTDB_id=970101 MHI53_RS16495 WP_340371748.1 3417299..3419707(-) (recD2) [Peribacillus sp. FSL E2-0218]
MSQQDSLDLFAEEKMFMKGSHLVTIFHNEENMYSVIRIRVHETNLSYEEKEAVVTGYFPRMHEDEIYIFYGALKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVDTLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTISMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKKLLEENKRDRIEFTNISSEIIELTEEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLDQTE
YEDQFPESEFLLALGELEERLGVSYASAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDLNDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHDIKKGRLPDDVTKQQEDRSFIRCQTGQIAQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNGNTDEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEEAFRLGIERNDEMRRKTTLREKLREVLSEEDAPVEKGMVREQEASYLDILMHADPMIGMENVTPYD
FM

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=970101 MHI53_RS16495 WP_340371748.1 3417299..3419707(-) (recD2) [Peribacillus sp. FSL E2-0218]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTGCAGAAGAGAAAATGTTCATGAAGGGTAGCCATTTGGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTATAAGAATTCGCGTGCATGAAACGAATCTAAGTTATGAAGAGAAGGAAGCTGTCG
TAACCGGTTATTTTCCAAGGATGCATGAGGATGAGATTTATATTTTTTATGGGGCCTTGAAGGAACATCCGCGTTTTGGG
CTTCAATTTCATGTTGAGCATTTTCGCAAGGATTTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTGTCCGGTGACCT
GTTTAAAGGGATTGGGAAAAAAACAGCCGAAAGCATTGTTGATACGCTAGGGGAAAAGGCAATTTCCAAGATTCTGGCTC
AGCCATCGTTACTTGATGATATTCCGAAGCTATCTGGTGAAAAAGCGAAAGGCCTCTATGATACGTTAGTTGAGCATCAA
GGCCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGCTTCGGTCCGCAGCTCTCGATGAAGATTTATCAAATGTATAA
GCAGGATACGATTTCCATGGTCCAGGGCAATCCGTATAAGCTTGTGGAGGATATTGAAGGGATTGGTTTTGGTCGGGCGG
ATGAACTTGGGCATCAGCTTGGCATTTCCGGCAGCCACCCCGATCGGATCAAGGCTGCTTGCTTGTATACGCTGGAATCC
CAGTGCCTTCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAAGCGGTAAAAAAGCTGCTGGAGGAAAATAA
GCGGGATCGGATCGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGGAAGAAGGCAAAATCGTTGTCGAAGATC
AACGGATTTATCCGCCATCCTTATTTTATTCCGAAAAGGGAATCGTGATGAACATCAAGCGGCTTCTCGACCAAACCGAG
TATGAAGACCAATTTCCGGAATCGGAATTTTTGCTTGCACTTGGCGAGCTGGAGGAGCGGCTTGGTGTCTCCTATGCTTC
AGCCCAAAAGGAAGCGATTCAGACAGCCCTGCAATCACCCATGTTAATCTTGACGGGGGGTCCGGGTACCGGTAAGACGA
CGGTCATCAAGGGAATCGTCGAGCTTTATGCCGAGCTGCATGGGGTATCAATGGACTTGAATGATTATAAAAAAGAAGGA
AGCGATCCATTCCCATTCGTCCTTGCGGCTCCCACTGGGCGTGCGGCGAAGCGTATGGCTGAATCGACCGGTCTTCCCGC
CGTCACGATTCACCGTTTGCTGGGATGGAATGGGAGTGAAGGCTTTTCGCATGATGAGGATAATCAGCTGGACGGGCGGA
TCGTGATCATAGATGAGGTATCCATGGTGGATACGTGGCTCGCCCATCAATTATTCAAAGCTCTGCCGGAAAATGTCCAG
GTGATATTGGTTGGCGATGAAGATCAACTGCCATCAGTCGGTCCTGGACAGGTTCTGAAGGACTTGCTTGCATCGAATTG
TGTACCTACTGTCAGTCTTGAACATATTTATCGTCAAGCGGATGGCTCTTCGATCATTGAATTGGCTCATGATATCAAAA
AAGGAAGGCTGCCAGATGATGTGACGAAGCAGCAAGAAGATCGCTCGTTCATTCGCTGCCAGACGGGCCAAATCGCCCAG
GTTATCGAGAAGGTGGTCGCAAATGCCCGGACGAAGGGCTTCACGGCCAAGGATATACAGGTGTTGGCACCCATGTACAG
AGGACCTGCCGGCATCGATGCCTTGAATAAAATGCTTCAGGAAGTGTTCAATGGCAATACTGATGAAAAACGGCGGGAAA
TCAAATTTGGCGATGTGATTTACAGGACGGGAGATAAGGTGCTGCAGCTGGTGAACCAGCCTGAGGAAGGGGTCTTTAAC
GGCGATATGGGAGAAATCGTATCGATATTGTTCGCTAAGGAAAATACCGATCATGTCGATAAAGTCATCATATCGTTCGA
GGGGATCGAAGTGACCTACACGAAGCAGGATCTGAATCAGATTACACATGCGTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGTGAGTTTCCCATCGTCATTTTGCCAGTGGTGAAAAGCTATTATCGGATGCTCCGACGCAATTTATTGTATACCGCG
ATCACCCGCAGCAAGAATTTCCTGATTCTTTGCGGGGAAGAAGAAGCATTCCGTCTCGGGATCGAACGGAATGATGAAAT
GCGCCGGAAAACGACACTGCGTGAAAAGCTGCGCGAGGTTTTGAGCGAAGAGGATGCTCCGGTTGAAAAGGGCATGGTGC
GTGAGCAGGAGGCAAGCTATCTGGATATCCTCATGCATGCCGACCCGATGATCGGGATGGAGAATGTTACTCCTTATGAT
TTTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.469

100

0.625

Multiple sequence alignment