Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AACH74_RS06040 Genome accession   NZ_AP029000
Coordinates   1224365..1225102 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GU2018_CL13     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1219365..1230102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH74_RS06010 (GU2018CL13_11670) yfiL 1219524..1219889 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  AACH74_RS06015 (GU2018CL13_11680) aroF 1220099..1221169 (+) 1071 WP_001168026.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AACH74_RS06020 (GU2018CL13_11690) tyrA 1221180..1222301 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AACH74_RS06025 (GU2018CL13_11700) pheA 1222344..1223504 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  AACH74_RS06030 pheL 1223603..1223650 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AACH74_RS06035 (GU2018CL13_11710) raiA 1223754..1224095 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AACH74_RS06040 (GU2018CL13_11720) comL 1224365..1225102 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AACH74_RS06045 (GU2018CL13_11730) rluD 1225237..1226217 (+) 981 WP_000079114.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AACH74_RS06050 (GU2018CL13_11740) yfiH 1226214..1226945 (+) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  AACH74_RS06055 (GU2018CL13_11750) clpC 1227075..1229648 (+) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=96988 AACH74_RS06040 WP_000197686.1 1224365..1225102(-) (comL) [Escherichia coli strain GU2018_CL13]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=96988 AACH74_RS06040 WP_000197686.1 1224365..1225102(-) (comL) [Escherichia coli strain GU2018_CL13]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment