Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHI27_RS26435 Genome accession   NZ_CP150297
Coordinates   5961042..5962802 (+) Length   586 a.a.
NCBI ID   WP_405175027.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0261     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5956042..5967802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI27_RS26415 (MHI27_26370) - 5956888..5957559 (+) 672 WP_076285307.1 response regulator transcription factor -
  MHI27_RS26420 (MHI27_26375) - 5957556..5958635 (+) 1080 WP_405175025.1 ATP-binding protein -
  MHI27_RS26425 (MHI27_26380) - 5958632..5959117 (+) 486 WP_339798572.1 GNAT family N-acetyltransferase -
  MHI27_RS26430 (MHI27_26385) rcrP 5959285..5961042 (+) 1758 WP_405175026.1 ABC transporter ATP-binding protein Regulator
  MHI27_RS26435 (MHI27_26390) rcrQ 5961042..5962802 (+) 1761 WP_405175027.1 ABC transporter ATP-binding protein Regulator
  MHI27_RS26440 (MHI27_26395) - 5962875..5963663 (-) 789 WP_042194519.1 RNA methyltransferase -
  MHI27_RS26445 (MHI27_26400) - 5963761..5964420 (-) 660 WP_076285312.1 TrkA family potassium uptake protein -
  MHI27_RS26450 (MHI27_26405) - 5964557..5964793 (+) 237 WP_042130985.1 small acid-soluble spore protein SspI -
  MHI27_RS26455 (MHI27_26410) - 5964892..5966490 (-) 1599 WP_042191749.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64084.31 Da        Isoelectric Point: 6.9025

>NTDB_id=969876 MHI27_RS26435 WP_405175027.1 5961042..5962802(+) (rcrQ) [Paenibacillus sp. FSL H8-0261]
MKTKNKGQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLFGPDKLSEITDKITAGLAGSIDMDGITTIGITLVVIYGVG
ALLSLSQGLIMSIITQKVSKKLRTDLAHKMNKLPISYYNKSATGDILSRVTNDVDTIGQSMNQSIGNVVTALAMFVGSIV
MMLKTNVIMTLTAIVATIIGFGLMVVIMKKSQKYFASQQEYLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQGLK
NSAFKAQFLSGLMPPLMGFIGNLGFVAVCIVGGVLAMNGTISFGVIVAFIMYVRYFTQPLSQIAQAAQSLQAASAAGGRV
FEFLEAEEMEDESHKENTLPTAKGKVKFDQVQFAYETSEKLIINNFSTDVKPGQKVAIVGPTGAGKTTLVNLLIRFNEVT
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIKENLIYNQQNITDEKLIEACKSVGLHRFIKSLSDGYNTVLNDK
VNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHEELLAQNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=969876 MHI27_RS26435 WP_405175027.1 5961042..5962802(+) (rcrQ) [Paenibacillus sp. FSL H8-0261]
ATGAAAACCAAAAATAAAGGCCAGAATACATGGAGCAAGCTGCTCCGCTACTGCCGTAAATATGTTCCGGTTATTGTGAT
TGCGCTAATCTGCGCGGCAGCTGGAACGGTGCTCACGTTATTCGGTCCGGACAAACTCTCCGAGATCACCGACAAAATTA
CAGCTGGTCTTGCCGGCAGCATCGATATGGACGGCATTACTACCATTGGCATTACCCTCGTCGTAATTTACGGCGTCGGT
GCGTTGTTGTCACTCTCGCAAGGCTTGATCATGTCGATTATTACCCAGAAGGTCTCGAAGAAATTAAGAACTGATCTTGC
TCATAAAATGAACAAACTTCCAATCTCCTACTATAATAAATCGGCCACAGGTGATATTTTATCCCGGGTAACGAATGATG
TAGATACCATCGGGCAATCGATGAATCAGAGTATTGGTAATGTCGTAACCGCCTTAGCTATGTTCGTCGGTTCGATCGTC
ATGATGCTGAAGACCAATGTAATTATGACCCTTACCGCTATCGTGGCAACGATCATCGGCTTTGGCCTTATGGTGGTCAT
TATGAAGAAATCGCAGAAATATTTTGCTAGCCAGCAGGAGTATTTAGGTAAAATCAACGGTCATGTCGAAGAAGTGTACA
CAGGACATAATGTAGTTAAAGCATATAATGGCGAAGCGCAGATGCGCACTACCTTCCAGGAATTAAATCAGGGACTGAAG
AACAGCGCCTTCAAAGCGCAATTCCTCTCTGGGCTGATGCCACCCCTGATGGGCTTTATTGGTAATCTAGGATTCGTTGC
CGTCTGTATCGTTGGAGGTGTACTCGCCATGAACGGTACGATTTCATTTGGGGTTATCGTCGCCTTCATTATGTATGTAC
GTTACTTTACCCAGCCGTTGTCCCAGATTGCCCAGGCCGCGCAGAGCCTGCAAGCTGCATCTGCAGCCGGCGGACGCGTG
TTCGAATTTCTGGAGGCTGAGGAAATGGAAGACGAGAGCCATAAAGAGAACACACTGCCAACTGCTAAAGGTAAAGTAAA
ATTTGACCAAGTACAATTTGCGTATGAGACTTCAGAAAAACTGATTATCAATAACTTCTCGACAGATGTAAAACCTGGGC
AAAAAGTGGCGATCGTTGGTCCTACCGGCGCAGGCAAAACTACGCTGGTCAATCTGCTCATCCGGTTCAACGAAGTGACG
GGCGGAGAAATCTACATCGATGACACGCCGATCAGCAGCCTGACGAGAGAGAACATTCATGATTTGTTCTGTATGGTCCT
GCAAGATACCTGGCTGTTTGAGGGTACCATCAAAGAGAACCTGATTTATAATCAGCAGAACATAACAGACGAGAAACTTA
TAGAGGCTTGCAAGTCCGTTGGCCTGCACCGCTTCATTAAATCCTTAAGTGACGGATACAACACCGTACTGAACGATAAA
GTTAATCTGTCCGCCGGACAAAAGCAGCAGCTCACCATCGCTCGCGCGATGCTGAAAGATGCGCCGATGCTCATTCTTGA
TGAAGCTACAAGCTCGGTGGATACCCGTACAGAACTGCTGATTCAACAGGCGATGGATAAGCTTATGGAAGGCAGAACCT
CTTTCGTTATCGCACACCGACTCTCAACGATCAAGAATGCCGATGTGATTCTGGTCCTGAAGGACGGCGATATCTTGGAA
AGCGGCAGCCACGAAGAATTGCTGGCTCAGAACGGATTCTATGCAGAGCTCTACAATAGCCAGTTTGAGCAGGCTTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(26-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.487

99.147

0.57

Multiple sequence alignment