Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSQ62_RS13135 Genome accession   NZ_CP150291
Coordinates   2647178..2648869 (-) Length   563 a.a.
NCBI ID   WP_341320588.1    Uniprot ID   -
Organism   Solibacillus sp. FSL H8-0523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2642178..2653869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ62_RS13115 (NSQ62_13115) - 2642209..2642928 (-) 720 WP_341320584.1 glycerophosphodiester phosphodiesterase family protein -
  NSQ62_RS13120 (NSQ62_13120) - 2642928..2644499 (-) 1572 WP_341320585.1 FapA family protein -
  NSQ62_RS13125 (NSQ62_13125) spo0A 2645009..2645836 (-) 828 WP_341320586.1 sporulation transcription factor Spo0A -
  NSQ62_RS13130 (NSQ62_13130) - 2646130..2647053 (-) 924 WP_341320587.1 SpoIVB peptidase S55 domain-containing protein -
  NSQ62_RS13135 (NSQ62_13135) recN 2647178..2648869 (-) 1692 WP_341320588.1 DNA repair protein RecN Machinery gene
  NSQ62_RS13140 (NSQ62_13140) argR 2648886..2649335 (-) 450 WP_341320589.1 transcriptional regulator ArgR -
  NSQ62_RS13145 (NSQ62_13145) - 2649600..2650421 (-) 822 WP_341320590.1 TlyA family RNA methyltransferase -
  NSQ62_RS13150 (NSQ62_13150) dxs 2650429..2652324 (-) 1896 WP_341320591.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSQ62_RS13155 (NSQ62_13155) - 2652488..2653372 (-) 885 WP_341320592.1 polyprenyl synthetase family protein -
  NSQ62_RS13160 (NSQ62_13160) xseB 2653376..2653600 (-) 225 WP_341320593.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63923.29 Da        Isoelectric Point: 4.6054

>NTDB_id=969697 NSQ62_RS13135 WP_341320588.1 2647178..2648869(-) (recN) [Solibacillus sp. FSL H8-0523]
MLKELSIRNFAIIDDLTVSFSEGLTVLTGETGAGKSIIIDAVNILAGGRGSTEFIRHGEKKAELGGLFEVTSDHHPIYLK
LEQHGIEAEEGTIILRRDLNDSGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKFHIHLLDHFAQHDLKDLK
AEYDEAYETYRQLKREFAEISIDEQRAAQRIDLYQFQIQELEQAALSVDEEEALSEERIRLMNFHKIFERANMAYEAISG
EGNGLDYIGNAMNALEDIVRLDTMFKESSESVTSSFYALQDAAYQVKNALDDLEYDAERLNEVEQRLALYQNMKRKYGTT
VEEILAYYEKIEEELSQLLNRDEAMQQNEQLLARMETDLNKLAVELTKIRKQNALQLSEAIMNELRMLHMEKAQFIVNFE
ELRHFDAHGKDYVAFYISTNVGEPPKSLPKVASGGELSRMMLALKTIFSSANGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISINSQVLCISHLPQVAAMADHQYYIKKQVEHDRTFTTITEMERDERIEEISRMMSGAEITDLTLQHASELLQMANERKD
GMK

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=969697 NSQ62_RS13135 WP_341320588.1 2647178..2648869(-) (recN) [Solibacillus sp. FSL H8-0523]
TTGTTAAAAGAACTTAGCATTCGAAACTTTGCAATTATTGATGATTTAACCGTAAGTTTTTCAGAAGGCTTAACCGTGCT
AACAGGGGAAACTGGTGCGGGTAAATCGATTATTATTGATGCTGTAAATATTTTAGCCGGTGGGCGTGGCTCGACAGAGT
TTATTCGTCATGGTGAAAAAAAGGCAGAGCTTGGTGGCCTTTTTGAAGTGACGAGTGATCATCACCCAATCTATTTAAAA
TTAGAACAGCATGGAATTGAAGCAGAAGAAGGCACCATTATTTTACGCCGGGACTTAAATGATTCTGGAAAAAGTATTTG
TCGTGTAAACGGTAAACTTGTACCACTTTCTGTATTGCGCGAAATCGGTGGTAGTTTGATTGATATTCACGGGCAACATG
AGAACCAAGAATTAATGGATGAAAAGTTTCATATTCACTTACTCGATCACTTTGCGCAGCACGATTTAAAGGATTTAAAG
GCGGAATATGACGAAGCTTATGAAACCTACCGTCAATTAAAACGAGAATTCGCTGAAATAAGTATTGATGAGCAGCGTGC
GGCGCAGCGAATTGATTTGTACCAATTTCAAATTCAAGAGCTTGAACAGGCAGCACTGAGTGTTGATGAAGAAGAAGCAT
TATCTGAAGAACGTATTCGCTTAATGAATTTCCATAAAATTTTCGAACGTGCCAATATGGCATACGAAGCGATTTCAGGC
GAGGGCAATGGCTTAGATTACATAGGGAATGCCATGAATGCCCTTGAAGATATTGTCCGATTAGACACAATGTTTAAAGA
GTCATCAGAATCGGTCACATCAAGCTTTTATGCACTTCAAGATGCGGCGTACCAAGTGAAAAATGCGCTTGATGATTTAG
AATATGATGCGGAGCGTCTCAATGAAGTAGAGCAGCGTCTCGCATTATACCAAAATATGAAACGTAAATACGGCACGACC
GTTGAAGAAATTTTAGCCTACTATGAAAAAATCGAAGAAGAGCTAAGCCAGTTGCTAAATCGCGATGAGGCGATGCAACA
AAATGAGCAATTATTAGCACGAATGGAAACTGACCTCAATAAACTAGCGGTAGAGTTAACAAAAATTCGTAAACAAAACG
CTTTACAGTTAAGTGAAGCGATTATGAATGAATTGCGCATGTTACATATGGAAAAAGCGCAATTTATTGTGAATTTTGAA
GAGCTTAGACATTTTGATGCACACGGTAAAGATTACGTGGCCTTCTATATTTCAACAAATGTAGGAGAACCACCTAAGTC
GCTGCCAAAAGTTGCCTCGGGTGGTGAGCTTTCTCGTATGATGCTTGCTCTTAAAACCATTTTCTCTTCAGCAAATGGCA
TTACGTCAATTATTTTTGATGAAGTTGATACAGGTGTGAGTGGCCGCGTCGCTCAGGCGATTGCTGAAAAAATTGCAGCC
ATTTCGATTAATTCACAAGTGTTATGTATTTCGCATTTACCACAAGTAGCGGCAATGGCTGATCATCAATACTACATTAA
AAAGCAAGTAGAGCATGACCGGACATTTACAACGATTACTGAAATGGAGCGAGATGAACGTATTGAAGAAATAAGCCGTA
TGATGAGTGGGGCAGAAATTACTGATTTAACATTGCAGCATGCTTCAGAATTATTACAAATGGCAAATGAACGTAAAGAT
GGAATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.091

100

0.531

Multiple sequence alignment