Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACJVG6_RS08175 Genome accession   NZ_CP177180
Coordinates   1742398..1743435 (-) Length   345 a.a.
NCBI ID   WP_004183264.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737398..1748435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS08150 ilvD 1737669..1739387 (-) 1719 WP_170314552.1 dihydroxy-acid dehydratase -
  ACJVG6_RS08155 - 1739500..1740681 (+) 1182 WP_004183260.1 NAD(P)/FAD-dependent oxidoreductase -
  ACJVG6_RS08165 trmB 1740898..1741539 (-) 642 WP_004183261.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACJVG6_RS08170 ccrZ 1741549..1742340 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  ACJVG6_RS08175 pptB 1742398..1743435 (-) 1038 WP_004183264.1 ABC transporter permease Regulator
  ACJVG6_RS08180 pptA 1743432..1744163 (-) 732 WP_004183266.1 ABC transporter ATP-binding protein Regulator
  ACJVG6_RS08185 - 1744228..1744647 (+) 420 WP_004183267.1 HIT family protein -
  ACJVG6_RS08190 - 1744644..1744943 (+) 300 WP_004183269.1 hypothetical protein -
  ACJVG6_RS08195 - 1745410..1745775 (-) 366 WP_156209922.1 hypothetical protein -
  ACJVG6_RS08200 - 1745868..1746476 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  ACJVG6_RS08205 - 1746494..1746619 (-) 126 WP_002884447.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 40070.67 Da        Isoelectric Point: 10.6255

>NTDB_id=969622 ACJVG6_RS08175 WP_004183264.1 1742398..1743435(-) (pptB) [Streptococcus salivarius strain MRD-KRBY]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALRLPVWGVILVGVAMAILKYVIFQKKAQPFYKQS
GLNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKENTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVINLKRLISQIVLVLTMVQAVCLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=969622 ACJVG6_RS08175 WP_004183264.1 1742398..1743435(-) (pptB) [Streptococcus salivarius strain MRD-KRBY]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGA
TCATTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAA
ATCCGTGGGCAATCATTCTTGGCCTGCTTGTGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAA
CCTGCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACAGGACGTGCTTTTAG
ATTTTGGGTAATAGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGAGACTTCCAGTTTGGGGAG
TTATCCTTGTAGGTGTGGCTATGGCTATTCTTAAGTATGTTATTTTCCAGAAGAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTGAGGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATCTTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAAGGGATTACGTCGAGTGTTAAACGTCGTGCCTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAAA
ATACCTGGTATAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCCCTA
ACGCTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACAGCACTAAAATCACACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAA
TCAATCTTAAGCGCTTGATTAGCCAGATTGTACTTGTACTGACTATGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(4-160)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

96.512

99.71

0.962
  pptB Streptococcus thermophilus LMD-9

91.279

99.71

0.91