Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACJVG6_RS03805 Genome accession   NZ_CP177180
Coordinates   836294..838081 (+) Length   595 a.a.
NCBI ID   WP_004182339.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831294..843081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS03790 sdaAA 833708..834577 (-) 870 WP_004182337.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACJVG6_RS03795 sdaAB 834590..835261 (-) 672 WP_002885347.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACJVG6_RS03800 - 835539..836234 (+) 696 WP_004182338.1 YjjG family noncanonical pyrimidine nucleotidase -
  ACJVG6_RS03805 uvrC 836294..838081 (+) 1788 WP_004182339.1 excinuclease ABC subunit UvrC Machinery gene
  ACJVG6_RS03810 cls 838170..839720 (+) 1551 WP_170314554.1 cardiolipin synthase -
  ACJVG6_RS03815 - 839801..840313 (+) 513 WP_004182341.1 GNAT family N-acetyltransferase -
  ACJVG6_RS03820 cls 840442..842016 (+) 1575 WP_004182342.1 cardiolipin synthase -
  ACJVG6_RS03825 - 842032..842685 (+) 654 WP_004182343.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 68694.07 Da        Isoelectric Point: 9.3106

>NTDB_id=969588 ACJVG6_RS03805 WP_004182339.1 836294..838081(+) (uvrC) [Streptococcus salivarius strain MRD-KRBY]
MNDLIKHKLELLPSNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDTKTELLVSEIADFEFIVTESNIEALLLEIN
LIQENMPKFNIRLKDDKSYPFIKITKELYPRLLITRQVKKDGGLYFGPYPDSGAANEIKKLLDRIFPFKKCKNPANKVCF
YYHIGQCNAHTICHTTEDYWKGLVEDVKNFLNGHDDKIVNQLKGKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQ
DMQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHLKPREIFIPGDIDQESVEAL
VGDEVKVFKPQRGEKKQLVNLATKNARVSLTQKFDLLEKDLAKTQGAIENLGKFMGIPTPVRIESFDNSNIMGTSPVSAM
VVFENGKPNKKEYRKYKIKTVEGPDDYASMREVIRRRYSRVKRDGLTPPDLIIMDGGQGQVNVAKDVLRNELNLSIPVAG
LQKNDKHQTNELLFGDPLQVIDLPRQSEEFFLLHRIQDEVHRFAITFHRQVRSKNSFSSKLDGVEGLGLKRKQKLLKHFK
SMTAIQKATVEDIQALGIPEKVAQALLDKLGEDNN

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=969588 ACJVG6_RS03805 WP_004182339.1 836294..838081(+) (uvrC) [Streptococcus salivarius strain MRD-KRBY]
ATGAATGATCTGATTAAACATAAGTTGGAACTGCTTCCAAGCAACCCAGGGTGTTATCTCCACAAGGACAAATTCGGCAA
TATTATTTATGTCGGTAAGGCTAAAAATCTAAAAAATCGTGTGCGTAGCTATTTTCGTGGAAGCCATGATACCAAGACGG
AGCTTTTGGTATCTGAGATTGCAGACTTTGAATTTATAGTAACCGAGTCTAATATCGAGGCCCTGCTTTTGGAAATTAAC
CTCATCCAAGAGAATATGCCTAAATTTAACATTCGCCTCAAGGATGATAAATCTTACCCTTTTATCAAGATTACCAAGGA
GCTCTATCCAAGGCTCTTGATTACTCGCCAGGTCAAAAAGGATGGTGGTCTTTATTTCGGTCCTTACCCAGACTCTGGTG
CAGCCAATGAAATCAAGAAGCTTTTGGACCGTATTTTCCCCTTTAAGAAATGTAAAAATCCTGCCAACAAGGTCTGTTTT
TATTACCATATTGGTCAATGTAATGCCCACACCATCTGTCACACCACTGAGGATTACTGGAAAGGTTTGGTTGAGGATGT
CAAGAATTTCCTAAACGGTCATGATGATAAAATCGTTAACCAGCTCAAGGGCAAGATGAAGGACATGTCTGATCAGATGG
AGTTTGAGCGTGCAGCGGAGTATCGAGACCTGATTGAGGCAGTGTCGACGCTCAGGACCAAACAAAGGGTTATCCGTCAA
GACATGCAGGACCGTGATATTTTCGGTTACTACGTGGACAAGGGCTGGATGTGTGTTCAGGTTTTCTTTGTCCGCCAAGG
GAAACTCATTCAGCGTGATGTCAATATGTTTCCTTACTATAATGACGCCGAGGAGGATTTTCTAACCTATATGGGTCAAT
TTTATCTGGATAGTCGTCATCTCAAGCCTAGGGAAATTTTTATTCCTGGAGACATTGATCAAGAGTCTGTCGAAGCTCTG
GTCGGAGATGAGGTCAAGGTTTTCAAACCTCAACGGGGAGAGAAGAAGCAGTTGGTTAATCTGGCGACTAAAAATGCCCG
TGTCAGTTTGACCCAAAAATTTGATCTCCTCGAAAAAGACTTGGCTAAGACCCAAGGAGCTATTGAAAATCTAGGCAAGT
TCATGGGGATTCCGACACCAGTCCGTATCGAGTCTTTCGATAACTCTAACATCATGGGAACTAGCCCTGTCTCTGCCATG
GTTGTCTTTGAAAATGGTAAACCCAATAAAAAAGAGTACCGCAAATATAAAATCAAGACTGTTGAAGGTCCTGACGATTA
TGCCAGTATGCGTGAGGTTATTCGTCGTCGCTATAGTCGTGTCAAACGAGATGGTTTAACGCCACCAGACCTCATTATCA
TGGATGGTGGTCAAGGTCAAGTCAATGTCGCCAAGGATGTACTACGTAATGAGCTTAATCTATCTATCCCAGTTGCGGGG
CTTCAGAAAAATGATAAGCACCAAACCAATGAATTGCTATTTGGAGATCCCTTACAGGTTATTGATTTGCCACGTCAATC
CGAGGAATTTTTCCTCCTTCACCGTATTCAGGATGAAGTACACCGTTTTGCCATCACCTTCCATCGACAAGTCCGTAGTA
AGAACAGTTTCAGTTCCAAACTTGATGGCGTGGAGGGGTTAGGACTTAAGCGCAAACAAAAACTCCTCAAACACTTCAAG
TCTATGACAGCTATCCAAAAAGCTACCGTTGAGGATATCCAAGCACTTGGCATTCCAGAAAAAGTAGCTCAGGCTCTATT
GGATAAGTTAGGAGAAGATAACAATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-87)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(377-525)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.271

99.16

0.756
  uvrC Streptococcus pneumoniae R6

75.932

99.16

0.753
  uvrC Streptococcus pneumoniae D39

75.932

99.16

0.753

Multiple sequence alignment