Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MHB78_RS09720 Genome accession   NZ_CP150286
Coordinates   1807911..1808204 (+) Length   97 a.a.
NCBI ID   WP_046129972.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0138     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1802911..1813204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB78_RS09685 (MHB78_09685) - 1803080..1803718 (+) 639 WP_046129978.1 MBL fold metallo-hydrolase -
  MHB78_RS09690 (MHB78_09690) - 1803767..1804012 (-) 246 WP_046129977.1 DUF2626 domain-containing protein -
  MHB78_RS09695 (MHB78_09695) - 1804216..1804596 (+) 381 WP_046129976.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MHB78_RS09705 (MHB78_09705) - 1804809..1805648 (+) 840 WP_046129975.1 STAS domain-containing protein -
  MHB78_RS09710 (MHB78_09710) comGA 1805805..1806872 (+) 1068 WP_046129974.1 competence type IV pilus ATPase ComGA Machinery gene
  MHB78_RS09715 (MHB78_09715) comGB 1806859..1807896 (+) 1038 WP_046129973.1 competence type IV pilus assembly protein ComGB Machinery gene
  MHB78_RS09720 (MHB78_09720) comGC 1807911..1808204 (+) 294 WP_046129972.1 competence type IV pilus major pilin ComGC Machinery gene
  MHB78_RS09725 (MHB78_09725) comGD 1808204..1808647 (+) 444 WP_046129971.1 competence type IV pilus minor pilin ComGD -
  MHB78_RS09730 (MHB78_09730) comGE 1808631..1808978 (+) 348 WP_046129970.1 competence type IV pilus minor pilin ComGE -
  MHB78_RS09735 (MHB78_09735) comGF 1808893..1809378 (+) 486 WP_082094061.1 competence type IV pilus minor pilin ComGF -
  MHB78_RS09740 (MHB78_09740) comGG 1809390..1809755 (+) 366 WP_046129969.1 competence type IV pilus minor pilin ComGG -
  MHB78_RS09745 (MHB78_09745) - 1809837..1810019 (+) 183 WP_046129968.1 YqzE family protein -
  MHB78_RS09750 (MHB78_09750) - 1810104..1810427 (-) 324 WP_046129967.1 DUF3889 domain-containing protein -
  MHB78_RS09755 (MHB78_09755) tapA 1810690..1811415 (+) 726 WP_046129966.1 amyloid fiber anchoring/assembly protein TapA -
  MHB78_RS09760 (MHB78_09760) - 1811412..1811993 (+) 582 WP_046129965.1 signal peptidase I -
  MHB78_RS09765 (MHB78_09765) - 1812062..1812856 (+) 795 WP_046129964.1 TasA family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10641.49 Da        Isoelectric Point: 7.8560

>NTDB_id=969545 MHB78_RS09720 WP_046129972.1 1807911..1808204(+) (comGC) [Bacillus sp. FSL K6-0138]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQNIQKKGCEGLINMVQAQITAYQMDHDGKTPSLGELESEGYIKKNLA
CPNGKSIVISNGKAQTQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=969545 MHB78_RS09720 WP_046129972.1 1807911..1808204(+) (comGC) [Bacillus sp. FSL K6-0138]
TTGAATGAAAAGGGATTTACGCTGATAGAAATGCTGGTCGTTATGCTTGTCATCTCAATTCTGCTCTTAATTACGATCCC
GAATGTGACGAAGCATAATCAAAACATTCAAAAGAAAGGCTGTGAGGGATTGATCAATATGGTTCAGGCCCAAATTACCG
CGTATCAGATGGATCACGACGGGAAAACGCCAAGTCTTGGAGAGCTTGAATCAGAGGGATATATCAAGAAAAATTTGGCG
TGTCCTAATGGAAAATCGATCGTGATTTCAAATGGCAAGGCACAAACACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

69.072

100

0.691
  comGC Staphylococcus aureus MW2

44.565

94.845

0.423
  comGC Staphylococcus aureus N315

44.565

94.845

0.423

Multiple sequence alignment