Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHH79_RS18230 Genome accession   NZ_CP150275
Coordinates   3509489..3510178 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-0993     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3504489..3515178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS18195 (MHH79_18195) flgN 3504669..3505151 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MHH79_RS18200 (MHH79_18200) flgM 3505167..3505433 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHH79_RS18205 (MHH79_18205) - 3505514..3505933 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MHH79_RS18210 (MHH79_18210) comFC 3506007..3506729 (-) 723 WP_157799620.1 comF operon protein ComFC Machinery gene
  MHH79_RS18215 (MHH79_18215) comFB 3506693..3506989 (-) 297 WP_015483764.1 late competence protein ComFB -
  MHH79_RS18220 (MHH79_18220) comFA 3507049..3508440 (-) 1392 WP_340034791.1 ATP-dependent helicase ComFA Machinery gene
  MHH79_RS18225 (MHH79_18225) - 3508546..3509391 (-) 846 WP_340034792.1 DegV family protein -
  MHH79_RS18230 (MHH79_18230) degU 3509489..3510178 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MHH79_RS18235 (MHH79_18235) degS 3510261..3511418 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MHH79_RS18240 (MHH79_18240) - 3511635..3512288 (+) 654 WP_003227979.1 YigZ family protein -
  MHH79_RS18245 (MHH79_18245) tagV 3512288..3513463 (+) 1176 WP_047183275.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MHH79_RS18250 (MHH79_18250) - 3513536..3514612 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=969140 MHH79_RS18230 WP_003219701.1 3509489..3510178(-) (degU) [Bacillus sp. FSL K6-0993]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=969140 MHH79_RS18230 WP_003219701.1 3509489..3510178(-) (degU) [Bacillus sp. FSL K6-0993]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment