Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHH79_RS18220 Genome accession   NZ_CP150275
Coordinates   3507049..3508440 (-) Length   463 a.a.
NCBI ID   WP_340034791.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502049..3513440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS18185 (MHH79_18185) flgL 3502220..3503116 (-) 897 WP_327844865.1 flagellar hook-associated protein FlgL -
  MHH79_RS18190 (MHH79_18190) flgK 3503127..3504650 (-) 1524 WP_340034790.1 flagellar hook-associated protein FlgK -
  MHH79_RS18195 (MHH79_18195) flgN 3504669..3505151 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MHH79_RS18200 (MHH79_18200) flgM 3505167..3505433 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHH79_RS18205 (MHH79_18205) - 3505514..3505933 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MHH79_RS18210 (MHH79_18210) comFC 3506007..3506729 (-) 723 WP_157799620.1 comF operon protein ComFC Machinery gene
  MHH79_RS18215 (MHH79_18215) comFB 3506693..3506989 (-) 297 WP_015483764.1 late competence protein ComFB -
  MHH79_RS18220 (MHH79_18220) comFA 3507049..3508440 (-) 1392 WP_340034791.1 ATP-dependent helicase ComFA Machinery gene
  MHH79_RS18225 (MHH79_18225) - 3508546..3509391 (-) 846 WP_340034792.1 DegV family protein -
  MHH79_RS18230 (MHH79_18230) degU 3509489..3510178 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MHH79_RS18235 (MHH79_18235) degS 3510261..3511418 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MHH79_RS18240 (MHH79_18240) - 3511635..3512288 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52456.50 Da        Isoelectric Point: 9.9286

>NTDB_id=969139 MHH79_RS18220 WP_340034791.1 3507049..3508440(-) (comFA) [Bacillus sp. FSL K6-0993]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
DSALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGNVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=969139 MHH79_RS18220 WP_340034791.1 3507049..3508440(-) (comFA) [Bacillus sp. FSL K6-0993]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GATTCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCTGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCAATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment