Detailed information NTG0096888

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: OO773_RS06210
• Genome accession: NZ_AP026769
• Coordinates: 1146287..1147231 (-)
• Length: 314 a.a.
• NCBI ID: WP_006564922.1
• Uniprot ID: -
• Organism: Helicobacter suis HS1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1141287..1152231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO773_RS06185 (HSHS1_12200)	-	1141851..1142306 (-)	456	WP_040499356.1	peroxiredoxin	-
OO773_RS06190 (HSHS1_12210)	-	1142315..1142959 (-)	645	WP_006564926.1	lactate utilization protein C	-
OO773_RS06195 (HSHS1_12220)	-	1142952..1144397 (-)	1446	WP_006564925.1	LutB/LldF family L-lactate oxidation iron-sulfur protein	-
OO773_RS06200 (HSHS1_12230)	-	1144394..1145131 (-)	738	WP_006564924.1	(Fe-S)-binding protein	-
OO773_RS06205 (HSHS1_12240)	comB10	1145184..1146290 (-)	1107	WP_176485116.1	DNA type IV secretion system protein ComB10	Machinery gene
OO773_RS06210 (HSHS1_12250)	comB9	1146287..1147231 (-)	945	WP_006564922.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
OO773_RS06215 (HSHS1_12260)	-	1147326..1148360 (+)	1035	WP_264828480.1	flagellar basal body P-ring protein FlgI	-
OO773_RS06220 (HSHS1_12270)	-	1148378..1148665 (+)	288	WP_264828481.1	hypothetical protein	-
OO773_RS06225 (HSHS1_12290)	-	1148734..1149708 (+)	975	Protein_1217	sensor histidine kinase	-
OO773_RS06230 (HSHS1_12300)	-	1149781..1150221 (+)	441	WP_006564918.1	DNA starvation/stationary phase protection protein	-
OO773_RS06235 (HSHS1_12310)	-	1150221..1150496 (+)	276	WP_034375042.1	DUF2018 family protein	-
OO773_RS06240 (HSHS1_12320)	-	1150489..1150875 (+)	387	WP_034375045.1	hypothetical protein	-
OO773_RS06245 (HSHS1_12330)	-	1150860..1151765 (+)	906	WP_006564917.1	polyprenyl synthetase family protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36358.05 Da
• Isoelectric Point: 9.4755

>NTDB_id=96888 OO773_RS06210 WP_006564922.1 1146287..1147231(-) (comB9) [Helicobacter suis HS1]
MCLRIWLLLFLGCLLVADSTAQPEEEEEEPPIYSMQDLHAIQSSFFKRERGDLDNTLFMDYRLGQTPKLRLRYAMITTLV
FSEPIREVILGDSVGFSTKMLGHERHQNSNVLLIKPLQIGIDSNLNVVGKSGKIYTFYIFSTTFTSPKHPVLNVYVSNKH
FFQSSPDQPLAKFEEKEILKSNVLESKKDTPDSTRYLKIGDASNAMWIDKTQIKRNYKVLGSRKRAWFCLWLCRIDTAKL
IKPLDIFNDAHFTYFKFDRKASQVKFPVAYKVVDGYDNPINTRIVGDYLIAEDIANKWTLREGKLHACIRRTRP

Nucleotide

• Length: 945 bp

>NTDB_id=96888 OO773_RS06210 WP_006564922.1 1146287..1147231(-) (comB9) [Helicobacter suis HS1]
ATGTGTTTAAGGATTTGGCTTTTGCTTTTTTTAGGGTGTTTATTAGTGGCTGATTCTACTGCTCAGCCAGAAGAGGAGGA
AGAAGAACCTCCCATTTACTCCATGCAAGATCTGCATGCCATTCAAAGTAGTTTTTTTAAAAGAGAGCGAGGGGATCTAG
ACAACACATTATTTATGGATTATCGCTTAGGCCAAACCCCTAAATTACGCCTGCGTTATGCGATGATCACTACTTTAGTT
TTTAGTGAACCTATTAGAGAGGTGATTTTGGGCGATAGTGTAGGTTTTAGCACTAAAATGCTAGGCCATGAGCGCCACCA
AAATAGCAATGTCTTACTCATTAAACCCCTACAAATTGGTATTGATTCTAATTTAAATGTGGTGGGTAAGAGTGGTAAGA
TTTATACTTTCTATATCTTTTCAACCACCTTTACAAGCCCTAAACACCCTGTTTTAAATGTCTATGTTTCCAATAAGCAT
TTTTTCCAATCTAGCCCAGATCAACCCCTAGCTAAATTTGAAGAAAAAGAGATTTTAAAGAGCAATGTTTTAGAGAGTAA
AAAGGACACACCCGATTCTACGCGTTATCTTAAAATCGGAGATGCCAGTAATGCCATGTGGATTGATAAAACCCAAATTA
AGAGAAACTATAAAGTTTTAGGGAGTAGAAAAAGGGCTTGGTTTTGTCTGTGGCTGTGTAGAATTGATACGGCTAAACTA
ATCAAACCCCTAGACATTTTTAACGACGCTCACTTTACCTACTTTAAATTTGATCGCAAAGCCTCTCAAGTTAAATTTCC
TGTAGCCTATAAAGTTGTAGATGGGTATGATAACCCCATTAATACCCGCATTGTAGGGGATTATCTCATCGCTGAGGATA
TTGCCAATAAATGGACTCTTAGAGAGGGCAAACTCCATGCCTGTATCCGCCGTACCCGCCCATGA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (58-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	47.72	100	0.5