Detailed information NTG0096887

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: OO773_RS06205
• Genome accession: NZ_AP026769
• Coordinates: 1145184..1146290 (-)
• Length: 368 a.a.
• NCBI ID: WP_176485116.1
• Uniprot ID: -
• Organism: Helicobacter suis HS1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1140184..1151290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO773_RS06180 (HSHS1_12190)	rfaE1	1140233..1141657 (+)	1425	WP_264828479.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
OO773_RS06185 (HSHS1_12200)	-	1141851..1142306 (-)	456	WP_040499356.1	peroxiredoxin	-
OO773_RS06190 (HSHS1_12210)	-	1142315..1142959 (-)	645	WP_006564926.1	lactate utilization protein C	-
OO773_RS06195 (HSHS1_12220)	-	1142952..1144397 (-)	1446	WP_006564925.1	LutB/LldF family L-lactate oxidation iron-sulfur protein	-
OO773_RS06200 (HSHS1_12230)	-	1144394..1145131 (-)	738	WP_006564924.1	(Fe-S)-binding protein	-
OO773_RS06205 (HSHS1_12240)	comB10	1145184..1146290 (-)	1107	WP_176485116.1	DNA type IV secretion system protein ComB10	Machinery gene
OO773_RS06210 (HSHS1_12250)	comB9	1146287..1147231 (-)	945	WP_006564922.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
OO773_RS06215 (HSHS1_12260)	-	1147326..1148360 (+)	1035	WP_264828480.1	flagellar basal body P-ring protein FlgI	-
OO773_RS06220 (HSHS1_12270)	-	1148378..1148665 (+)	288	WP_264828481.1	hypothetical protein	-
OO773_RS06225 (HSHS1_12290)	-	1148734..1149708 (+)	975	Protein_1217	sensor histidine kinase	-
OO773_RS06230 (HSHS1_12300)	-	1149781..1150221 (+)	441	WP_006564918.1	DNA starvation/stationary phase protection protein	-
OO773_RS06235 (HSHS1_12310)	-	1150221..1150496 (+)	276	WP_034375042.1	DUF2018 family protein	-
OO773_RS06240 (HSHS1_12320)	-	1150489..1150875 (+)	387	WP_034375045.1	hypothetical protein	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41169.58 Da
• Isoelectric Point: 7.4578

>NTDB_id=96887 OO773_RS06205 WP_176485116.1 1145184..1146290(-) (comB10) [Helicobacter suis HS1]
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP

Nucleotide

• Length: 1107 bp

>NTDB_id=96887 OO773_RS06205 WP_176485116.1 1145184..1146290(-) (comB10) [Helicobacter suis HS1]
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (162-349)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	56.764	100	0.582