Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHH68_RS16120 Genome accession   NZ_CP150266
Coordinates   3135002..3136381 (-) Length   459 a.a.
NCBI ID   WP_339164086.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2841     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3130002..3141381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH68_RS16085 (MHH68_16085) flgL 3130182..3131093 (-) 912 WP_339164074.1 flagellar hook-associated protein FlgL -
  MHH68_RS16090 (MHH68_16090) flgK 3131103..3132623 (-) 1521 WP_339164077.1 flagellar hook-associated protein FlgK -
  MHH68_RS16095 (MHH68_16095) - 3132639..3133121 (-) 483 WP_034660146.1 flagellar protein FlgN -
  MHH68_RS16100 (MHH68_16100) flgM 3133140..3133403 (-) 264 WP_339164079.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHH68_RS16105 (MHH68_16105) - 3133483..3133902 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  MHH68_RS16110 (MHH68_16110) comFC 3133959..3134645 (-) 687 WP_186306801.1 ComF family protein Machinery gene
  MHH68_RS16115 (MHH68_16115) - 3134642..3134935 (-) 294 WP_061409760.1 competence protein ComFB -
  MHH68_RS16120 (MHH68_16120) comFA 3135002..3136381 (-) 1380 WP_339164086.1 DEAD/DEAH box helicase Machinery gene
  MHH68_RS16125 (MHH68_16125) - 3136501..3137343 (-) 843 WP_058013557.1 DegV family protein -
  MHH68_RS16130 (MHH68_16130) degU 3137561..3138250 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHH68_RS16135 (MHH68_16135) degS 3138315..3139490 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  MHH68_RS16140 (MHH68_16140) - 3139712..3140380 (+) 669 WP_339164090.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52553.44 Da        Isoelectric Point: 10.1861

>NTDB_id=968751 MHH68_RS16120 WP_339164086.1 3135002..3136381(-) (comFA) [Bacillus sp. FSL K6-2841]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLNWLEEKGLVMRTPAIERKANGLICCRCGVSKNWYFAHSPCDKCQKDCVYC
RSCIMMGKTKECGFLYEWTGPQREEPCHTELTWQGNLSKGQKRASEKLIKAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIKDVFRGQLEAIKIPLRFHQQPLPVPSFHWVGNWKKKLKKNQLPSKVMNWMQN
HITKKRRTLFFVPSISTMKKVTKVLRKHHLNVEGVSAEDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRNMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=968751 MHH68_RS16120 WP_339164086.1 3135002..3136381(-) (comFA) [Bacillus sp. FSL K6-2841]
TTGAACATGGACAAAGCAATGGAACTAGGGCAGCACCTGCAGTCACGCCACTTGCTTACTGCTGAAACAAGATGCTCGCA
GTCTGATTTGAATTGGTTGGAGGAGAAAGGGTTAGTTATGCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTATCAAAAAATTGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAAGGGAAGAACCATG
TCACACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCAAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
TCAAGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTCATTGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATTGATGAAGTGGACGCCTTTCCTTATTCAATTGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAAAGATGTATTTCGTGGACAACTAGAAGCCATTAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCCGTCCCAT
CCTTTCATTGGGTTGGAAATTGGAAGAAGAAATTAAAGAAGAATCAGCTCCCATCTAAAGTAATGAATTGGATGCAGAAT
CATATTACAAAAAAGAGAAGGACTTTATTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCATCACTTAAATGTAGAAGGGGTGTCTGCTGAAGATCCAGACAGGAAACAAAAGGTCCAGCAATTCAGAGATGATAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACGATTCCAAATGTACAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCTGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAATATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCTGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(322-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.187

99.129

0.527

Multiple sequence alignment