Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHH88_RS22265 Genome accession   NZ_CP150264
Coordinates   4563597..4564169 (-) Length   190 a.a.
NCBI ID   WP_024364645.1    Uniprot ID   A0A4U2Z4N7
Organism   Lysinibacillus sp. FSL K6-3209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4558597..4569169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH88_RS22240 (MHH88_22240) - 4558894..4559835 (-) 942 WP_069514059.1 YybS family protein -
  MHH88_RS22245 (MHH88_22245) - 4560095..4560787 (-) 693 WP_339260756.1 ATP-binding cassette domain-containing protein -
  MHH88_RS22250 (MHH88_22250) - 4560780..4562066 (-) 1287 WP_339260758.1 hypothetical protein -
  MHH88_RS22255 (MHH88_22255) - 4562063..4562914 (-) 852 WP_339260760.1 hypothetical protein -
  MHH88_RS22260 (MHH88_22260) rpsR 4563313..4563549 (-) 237 WP_010860721.1 30S ribosomal protein S18 -
  MHH88_RS22265 (MHH88_22265) ssbA 4563597..4564169 (-) 573 WP_024364645.1 single-stranded DNA-binding protein Machinery gene
  MHH88_RS22270 (MHH88_22270) rpsF 4564206..4564496 (-) 291 WP_024364644.1 30S ribosomal protein S6 -
  MHH88_RS22275 (MHH88_22275) - 4564670..4565233 (+) 564 WP_339260764.1 DUF3267 domain-containing protein -
  MHH88_RS22280 (MHH88_22280) - 4565259..4566299 (-) 1041 WP_069514050.1 acyl-CoA dehydrogenase family protein -
  MHH88_RS22285 (MHH88_22285) ychF 4566470..4567570 (-) 1101 WP_024364641.1 redox-regulated ATPase YchF -
  MHH88_RS22290 (MHH88_22290) - 4567939..4568139 (-) 201 WP_069514382.1 DUF951 domain-containing protein -
  MHH88_RS22295 (MHH88_22295) - 4568141..4569022 (-) 882 WP_339260769.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20599.61 Da        Isoelectric Point: 4.9533

>NTDB_id=968664 MHH88_RS22265 WP_024364645.1 4563597..4564169(-) (ssbA) [Lysinibacillus sp. FSL K6-3209]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQYGGAMPQQGSFGGGASYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=968664 MHH88_RS22265 WP_024364645.1 4563597..4564169(-) (ssbA) [Lysinibacillus sp. FSL K6-3209]
ATGATAAATCGTGTCGTATTAGTTGGAAGACTAACAAAAGACCCTGAGCTGCGCTACACACCGAATGGTATTGCGTCTAC
TCGATTTACAGTAGCTGTAAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAG
TGGTGGAGGTGCTCCTGCATCGAACCAATACGGCGGACAATCTTACGCTAATAGCCAGCCGTCATATGGCGGTGGACAAC
CACAGCAACAGTATGGTGGCGCGATGCCTCAGCAAGGTTCATTTGGCGGCGGTGCTTCTTATCAGCAAAATCAACCACCA
ATGAACCAGCCGAACTATACAAGAGTAGACGAAGATCCATTTGCGAATAGCAAGGGACCGATTGAAGTATCAGAAGACGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2Z4N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.737

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

48.969

100

0.5

Multiple sequence alignment