Detailed information NTG0968575

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MHH62_RS11865
• Genome accession: NZ_CP150262
• Coordinates: 2708593..2709459 (+)
• Length: 288 a.a.
• NCBI ID: WP_032903993.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FSL L8-0168
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2703593..2714459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MHH62_RS11840 (MHH62_11840)	nadC	2705280..2706128 (+)	849	WP_014716876.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MHH62_RS11845 (MHH62_11845)	-	2706178..2706483 (-)	306	WP_014716875.1	DUF6388 family protein	-
MHH62_RS11855 (MHH62_11855)	-	2706773..2707186 (-)	414	WP_166406348.1	pilin	-
MHH62_RS11860 (MHH62_11860)	pilC	2707388..2708596 (+)	1209	WP_032903994.1	type II secretion system F family protein	Machinery gene
MHH62_RS11865 (MHH62_11865)	pilD	2708593..2709459 (+)	867	WP_032903993.1	A24 family peptidase	Machinery gene
MHH62_RS11870 (MHH62_11870)	coaE	2709456..2710079 (+)	624	WP_032903992.1	dephospho-CoA kinase	-
MHH62_RS11875 (MHH62_11875)	yacG	2710076..2710276 (+)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
MHH62_RS11880 (MHH62_11880)	-	2710273..2710488 (-)	216	WP_003171680.1	hypothetical protein	-
MHH62_RS11885 (MHH62_11885)	-	2710553..2711242 (-)	690	WP_102666587.1	energy-coupling factor ABC transporter permease	-
MHH62_RS11890 (MHH62_11890)	-	2711372..2712001 (+)	630	WP_003188431.1	DUF1780 domain-containing protein	-
MHH62_RS11895 (MHH62_11895)	-	2712056..2712229 (+)	174	WP_014716869.1	DUF3094 family protein	-
MHH62_RS11900 (MHH62_11900)	-	2712290..2713588 (+)	1299	WP_339232986.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31779.01 Da
• Isoelectric Point: 7.0537

>NTDB_id=968575 MHH62_RS11865 WP_032903993.1 2708593..2709459(+) (pilD) [Pseudomonas sp. FSL L8-0168]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILDLPAEPGGPAYNLMRPNSCCPRCDQPIRPW
ENIPVLSYLLLRGHCAHCREPIGLRYPLTELACALISTAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLPDAVWGAVIGYMSLWCLFWLFKMATGRDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVL
AGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=968575 MHH62_RS11865 WP_032903993.1 2708593..2709459(+) (pilD) [Pseudomonas sp. FSL L8-0168]
TTGAGCCTGCTGCTGAGCGAACATCCCTGGGCGTTTGTTGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGTAGCTTCCT
CAATGTGCTGGCGTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGTGCACAGGCCCATGAGATTCTCGACTTGCCAG
CCGAGCCCGGTGGGCCGGCCTATAACCTGATGCGTCCGAACTCCTGCTGCCCGCGCTGCGATCAACCGATTCGGCCTTGG
GAAAATATCCCGGTGCTCAGCTACCTGTTGCTCCGGGGGCATTGTGCCCACTGCCGTGAGCCCATCGGCCTGCGTTACCC
CCTCACCGAACTCGCGTGCGCGCTGATCTCAACCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGCATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGTGCTGACCTGTTGACGCCACTGCCCGATGCAGTGTGGGGCGCGGTTATCGG
CTACATGAGCTTGTGGTGCCTGTTCTGGCTGTTCAAGATGGCCACCGGCAGAGACGGCATGGGCCATGGCGACTTCAAGT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGCTT
GCCGGGCTGATCCTGCTGCGTTTGCGTAAGGCCCAGGTGTCAGCGCCGATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.943	98.264	0.51
pilD	Vibrio campbellii strain DS40M4	49.296	98.611	0.486
pilD	Neisseria gonorrhoeae MS11	49.259	93.75	0.462
pilD	Acinetobacter baumannii D1279779	47.619	94.792	0.451
pilD	Acinetobacter nosocomialis M2	46.886	94.792	0.444