Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MKX80_RS17425 Genome accession   NZ_CP150260
Coordinates   3413183..3413821 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus sp. FSL K6-0972     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408183..3418821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS17390 (MKX80_17390) - 3409373..3409804 (+) 432 WP_154999195.1 Na(+)/H(+) antiporter subunit B -
  MKX80_RS17395 (MKX80_17395) - 3409804..3410145 (+) 342 WP_154999194.1 Na(+)/H(+) antiporter subunit C -
  MKX80_RS17400 (MKX80_17400) - 3410138..3411616 (+) 1479 WP_154999193.1 Na+/H+ antiporter subunit D -
  MKX80_RS17405 (MKX80_17405) - 3411622..3412098 (+) 477 WP_154999192.1 Na+/H+ antiporter subunit E -
  MKX80_RS17410 (MKX80_17410) - 3412098..3412382 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  MKX80_RS17415 (MKX80_17415) mnhG 3412366..3412740 (+) 375 WP_075751277.1 monovalent cation/H(+) antiporter subunit G -
  MKX80_RS17420 (MKX80_17420) - 3412777..3413166 (-) 390 WP_154999191.1 hotdog fold thioesterase -
  MKX80_RS17425 (MKX80_17425) comA 3413183..3413821 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  MKX80_RS17430 (MKX80_17430) comP 3413908..3416214 (-) 2307 WP_234112223.1 ATP-binding protein Regulator
  MKX80_RS17435 (MKX80_17435) comX 3416216..3416389 (-) 174 WP_234112224.1 competence pheromone ComX -
  MKX80_RS17440 (MKX80_17440) - 3416393..3417274 (-) 882 WP_268332708.1 polyprenyl synthetase family protein -
  MKX80_RS17445 (MKX80_17445) degQ 3417464..3417604 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  MKX80_RS17450 (MKX80_17450) - 3418090..3418437 (+) 348 WP_268343102.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=968476 MKX80_RS17425 WP_003184849.1 3413183..3413821(-) (comA) [Bacillus sp. FSL K6-0972]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=968476 MKX80_RS17425 WP_003184849.1 3413183..3413821(-) (comA) [Bacillus sp. FSL K6-0972]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGTATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGGTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCATGGCGCCATTAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTGCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACTCAGCACGATCTCTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCAGATGCGCTTCATTTAAGCAAGAGGTCGATCGAATACAGTCT
GACTTCAGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGGGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment