Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKX80_RS12965 Genome accession   NZ_CP150260
Coordinates   2607317..2609047 (-) Length   576 a.a.
NCBI ID   WP_182070399.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2602317..2614047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS12940 (MKX80_12940) - 2602402..2603010 (-) 609 WP_234113235.1 N-acetylmuramoyl-L-alanine amidase -
  MKX80_RS12945 (MKX80_12945) - 2603058..2603378 (-) 321 WP_154994143.1 membrane lipoprotein lipid attachment site-containing protein -
  MKX80_RS12950 (MKX80_12950) - 2603901..2604470 (-) 570 WP_182071007.1 serine acetyltransferase -
  MKX80_RS12955 (MKX80_12955) spo0A 2604763..2605563 (-) 801 WP_154994145.1 sporulation transcription factor Spo0A Regulator
  MKX80_RS12960 (MKX80_12960) spoIVB 2605853..2607169 (-) 1317 WP_154994153.1 SpoIVB peptidase -
  MKX80_RS12965 (MKX80_12965) recN 2607317..2609047 (-) 1731 WP_182070399.1 DNA repair protein RecN Machinery gene
  MKX80_RS12970 (MKX80_12970) argR 2609079..2609528 (-) 450 WP_003183369.1 transcriptional regulator ArgR -
  MKX80_RS12975 (MKX80_12975) - 2609693..2610538 (-) 846 WP_154994148.1 TlyA family RNA methyltransferase -
  MKX80_RS12980 (MKX80_12980) dxs 2610535..2612436 (-) 1902 WP_182070398.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKX80_RS12985 (MKX80_12985) - 2612670..2613560 (-) 891 WP_154997692.1 polyprenyl synthetase family protein -
  MKX80_RS12990 (MKX80_12990) - 2613550..2613810 (-) 261 WP_020452133.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64566.40 Da        Isoelectric Point: 4.8371

>NTDB_id=968459 MKX80_RS12965 WP_182070399.1 2607317..2609047(-) (recN) [Bacillus sp. FSL K6-0972]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDGGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFHV
KKAERDDDAPVVNGMPVQLTKHGIDNVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKITEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTSG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=968459 MKX80_RS12965 WP_182070399.1 2607317..2609047(-) (recN) [Bacillus sp. FSL K6-0972]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCCTTTGAAAAAGGGCTGACGGTTCT
AACCGGTGAAACAGGGGCCGGAAAATCGATCATCATCGACGCCGTTTCTTTGCTTGTCGGAGGCCGCGGATCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGGGCCGAATTGGAAGGGCTTTTCCTCCTTGACGGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTGGGGATTGAGGCCTCAGATGATATGATCGTCATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGACAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTTGCGGGAGAAGAAATCGAGAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGATGTCATGAAAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGGCTCGATTTAATACAGTTCCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGATGAACTTCTTC
AGGAAGAGCGCCGTCAAATTGCAAATTTCGAAAAAATATATGAAGCGCTGCAAAATGCCTATAATGCGCTTCGCAACGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCCGTAGCCAATGCGTACTACATTCTCGAAGATTCAACCTTTCAGATCAGAAATATGCTGGATGAGCTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGTTTAAACGAAATCAAACAGCTGAAACGCAAATATGGTGCTACTGTC
GAAGATATCCAAGCCTATTCGGCTAAGATAGAGGAAGAAATCGACCGGATCGAAAACCGGGACAGCCATTTGCAGGCTTT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTTCATGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGAATGCCGGTTCAGCTCACAAAGCACGGCATTGACAACGT
CCGTTTCCTGATCTCTACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAAGTTGCTTCGGGAGGAGAGCTGTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCCGCTCAGCAGGATGTCACATCGATCATTTTCGATGAAGTGGACACAGGTGTA
AGCGGAAGAGTCGCGCAGGCGATCGCTGAAAAAATACACCGCGTCTCGATCGGCTCCCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CACCTTTGTCAAAACAGGAAAAAATCACGGAAATCGGCCGGATGATCGCCGGCGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTGAATCAAGCTAAGCTCGTCAAAACCAGCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.25

100

0.813

Multiple sequence alignment