Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MKX80_RS11800 Genome accession   NZ_CP150260
Coordinates   2353259..2353855 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus sp. FSL K6-0972     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2348259..2358855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS11760 (MKX80_11760) - 2349275..2349781 (-) 507 WP_043926959.1 PTS glucose transporter subunit IIA -
  MKX80_RS11765 (MKX80_11765) - 2349959..2350378 (+) 420 WP_154994781.1 Hsp20/alpha crystallin family protein -
  MKX80_RS11770 (MKX80_11770) - 2350397..2350840 (-) 444 WP_154994779.1 YppG family protein -
  MKX80_RS11775 (MKX80_11775) - 2351020..2351220 (+) 201 WP_011198064.1 YppF family protein -
  MKX80_RS11780 (MKX80_11780) - 2351253..2351624 (-) 372 WP_154994778.1 YppE family protein -
  MKX80_RS11785 (MKX80_11785) - 2351682..2351909 (-) 228 WP_154994776.1 YppD family protein -
  MKX80_RS11790 (MKX80_11790) sspM 2352109..2352213 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  MKX80_RS11795 (MKX80_11795) - 2352245..2353177 (-) 933 WP_234113221.1 DUF2515 domain-containing protein -
  MKX80_RS11800 (MKX80_11800) recU 2353259..2353855 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  MKX80_RS11805 (MKX80_11805) - 2353913..2356588 (+) 2676 WP_234111909.1 PBP1A family penicillin-binding protein -
  MKX80_RS11810 (MKX80_11810) - 2356609..2357079 (-) 471 WP_234113222.1 YpoC family protein -
  MKX80_RS11815 (MKX80_11815) nth 2357109..2357771 (-) 663 WP_023857420.1 endonuclease III -
  MKX80_RS11820 (MKX80_11820) - 2357788..2358486 (-) 699 WP_176274731.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=968457 MKX80_RS11800 WP_003182896.1 2353259..2353855(+) (recU) [Bacillus sp. FSL K6-0972]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=968457 MKX80_RS11800 WP_003182896.1 2353259..2353855(+) (recU) [Bacillus sp. FSL K6-0972]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAGGAAGCATATTTCAAGCAG
TCATCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGGACCTC
CTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGA
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment