Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MKX80_RS08985 Genome accession   NZ_CP150260
Coordinates   1764610..1765512 (+) Length   300 a.a.
NCBI ID   WP_154999503.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1759610..1770512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS08965 (MKX80_08965) - 1760265..1761959 (+) 1695 WP_268336392.1 hypothetical protein -
  MKX80_RS08970 (MKX80_08970) - 1761956..1762240 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  MKX80_RS08975 (MKX80_08975) sucC 1762416..1763576 (+) 1161 WP_154999504.1 ADP-forming succinate--CoA ligase subunit beta -
  MKX80_RS08980 (MKX80_08980) sucD 1763595..1764497 (+) 903 WP_009328521.1 succinate--CoA ligase subunit alpha -
  MKX80_RS08985 (MKX80_08985) dprA 1764610..1765512 (+) 903 WP_154999503.1 DNA-processing protein DprA Machinery gene
  MKX80_RS08990 (MKX80_08990) topA 1765717..1767792 (+) 2076 WP_154999502.1 type I DNA topoisomerase -
  MKX80_RS08995 (MKX80_08995) trmFO 1767868..1769172 (+) 1305 WP_154999501.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKX80_RS09000 (MKX80_09000) xerC 1769239..1770153 (+) 915 WP_154999500.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33221.42 Da        Isoelectric Point: 10.0650

>NTDB_id=968450 MKX80_RS08985 WP_154999503.1 1764610..1765512(+) (dprA) [Bacillus sp. FSL K6-0972]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEADGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNEKLLHEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTVVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPDIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLNIEDILSELPPSHAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=968450 MKX80_RS08985 WP_154999503.1 1764610..1765512(+) (dprA) [Bacillus sp. FSL K6-0972]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAACTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAACGTTAAACGGCTTATCCGTTCTTACGAGGCGGACGGTGTCCGCATG
ACCGCCATATCTTCCCCCGACTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CGAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TCCATCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGGTCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGCTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCATCCTCCTGACATTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAAAGCGGATCGCTC
ATCACCGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCGAGGCTGATTCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTTCCGCCTTCACACG
CTCAATATACGGAGCCCGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

38.065

100

0.393
  dprA Lactococcus lactis subsp. cremoris KW2

39.781

91.333

0.363

Multiple sequence alignment