Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACK2VH_RS20205 Genome accession   NZ_CP176684
Coordinates   4422410..4422739 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain GTVSS-024     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4417410..4427739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VH_RS20190 (ACK2VH_20190) uvrB 4418797..4420809 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  ACK2VH_RS20195 (ACK2VH_20195) - 4420997..4422193 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  ACK2VH_RS20205 (ACK2VH_20205) comEA/comE1 4422410..4422739 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  ACK2VH_RS20210 (ACK2VH_20210) - 4422930..4424927 (-) 1998 WP_023088173.1 polysaccharide biosynthesis protein -
  ACK2VH_RS20215 (ACK2VH_20215) - 4424962..4425981 (-) 1020 WP_003158833.1 MraY family glycosyltransferase -
  ACK2VH_RS20220 (ACK2VH_20220) - 4425983..4426939 (-) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=968391 ACK2VH_RS20205 WP_003104586.1 4422410..4422739(-) (comEA/comE1) [Pseudomonas aeruginosa strain GTVSS-024]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=968391 ACK2VH_RS20205 WP_003104586.1 4422410..4422739(-) (comEA/comE1) [Pseudomonas aeruginosa strain GTVSS-024]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment