Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MKX38_RS16120 Genome accession   NZ_CP150258
Coordinates   3099899..3100543 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0025     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3094899..3105543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX38_RS16085 (MKX38_16085) - 3096089..3096520 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  MKX38_RS16090 (MKX38_16090) - 3096520..3096861 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  MKX38_RS16095 (MKX38_16095) - 3096854..3098335 (+) 1482 WP_019712488.1 Na+/H+ antiporter subunit D -
  MKX38_RS16100 (MKX38_16100) - 3098341..3098817 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  MKX38_RS16105 (MKX38_16105) - 3098817..3099101 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  MKX38_RS16110 (MKX38_16110) mnhG 3099085..3099459 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  MKX38_RS16115 (MKX38_16115) - 3099500..3099880 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  MKX38_RS16120 (MKX38_16120) comA 3099899..3100543 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  MKX38_RS16125 (MKX38_16125) comP 3100624..3102921 (-) 2298 WP_339187702.1 histidine kinase Regulator
  MKX38_RS16130 (MKX38_16130) comX 3102929..3103090 (-) 162 WP_003241045.1 competence pheromone ComX -
  MKX38_RS16135 (MKX38_16135) - 3103105..3103965 (-) 861 WP_032677058.1 polyprenyl synthetase family protein -
  MKX38_RS16140 (MKX38_16140) degQ 3104150..3104290 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  MKX38_RS16145 (MKX38_16145) - 3104512..3104574 (+) 63 Protein_3113 hypothetical protein -
  MKX38_RS16150 (MKX38_16150) - 3104753..3105121 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=968330 MKX38_RS16120 WP_003220716.1 3099899..3100543(-) (comA) [Bacillus sp. FSL M8-0025]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=968330 MKX38_RS16120 WP_003220716.1 3099899..3100543(-) (comA) [Bacillus sp. FSL M8-0025]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGTGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment