Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACK2V7_RS09115 Genome accession   NZ_CP176676
Coordinates   1727971..1728744 (+) Length   257 a.a.
NCBI ID   WP_002875504.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GTVSS-018     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1722971..1733744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V7_RS09100 (ACK2V7_09100) - 1723820..1725754 (-) 1935 WP_057036753.1 RNB domain-containing ribonuclease -
  ACK2V7_RS09105 (ACK2V7_09105) ilvC 1725873..1726895 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  ACK2V7_RS09110 (ACK2V7_09110) - 1726899..1727981 (+) 1083 WP_002874286.1 divergent polysaccharide deacetylase family protein -
  ACK2V7_RS09115 (ACK2V7_09115) dprA 1727971..1728744 (+) 774 WP_002875504.1 DNA-processing protein DprA Machinery gene
  ACK2V7_RS09120 (ACK2V7_09120) dprB 1728741..1729124 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  ACK2V7_RS09125 (ACK2V7_09125) - 1729153..1729992 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACK2V7_RS09130 (ACK2V7_09130) msrA 1730168..1730665 (-) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACK2V7_RS09135 (ACK2V7_09135) ppa 1730707..1731225 (-) 519 WP_002867724.1 inorganic diphosphatase -
  ACK2V7_RS09140 (ACK2V7_09140) adk 1731235..1731813 (-) 579 WP_002859580.1 adenylate kinase -
  ACK2V7_RS09145 (ACK2V7_09145) aspS 1731810..1733561 (-) 1752 WP_002875506.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28820.56 Da        Isoelectric Point: 6.4874

>NTDB_id=968237 ACK2V7_RS09115 WP_002875504.1 1727971..1728744(+) (dprA) [Campylobacter jejuni strain GTVSS-018]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYALPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=968237 ACK2V7_RS09115 WP_002875504.1 1727971..1728744(+) (dprA) [Campylobacter jejuni strain GTVSS-018]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAAGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGCTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment