Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OO774_RS02830 Genome accession   NZ_AP026763
Coordinates   582919..583530 (-) Length   203 a.a.
NCBI ID   WP_264904483.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 577919..588530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS02820 (VspSTUT11_04760) aceF 578951..580837 (+) 1887 WP_264904480.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OO774_RS02825 (VspSTUT11_04770) lpdA 581115..582542 (+) 1428 WP_264904481.1 dihydrolipoyl dehydrogenase -
  OO774_RS02830 (VspSTUT11_04780) opaR 582919..583530 (-) 612 WP_264904483.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OO774_RS02835 (VspSTUT11_04790) hpt 583849..584379 (+) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  OO774_RS02840 (VspSTUT11_04800) - 584505..585380 (-) 876 WP_264904484.1 LysR family transcriptional regulator -
  OO774_RS02845 (VspSTUT11_04810) - 585480..586847 (+) 1368 WP_264904485.1 NADH-quinone oxidoreductase subunit L -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23511.87 Da        Isoelectric Point: 6.6009

>NTDB_id=96808 OO774_RS02830 WP_264904483.1 582919..583530(-) (opaR) [Vibrio sp. STUT-A11]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNKHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYERG

Nucleotide


Download         Length: 612 bp        

>NTDB_id=96808 OO774_RS02830 WP_264904483.1 582919..583530(-) (opaR) [Vibrio sp. STUT-A11]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAACTGATGGAAATCGCGTTGGA
AGTATTTGCGCGCCGTGGCATTGGCCGCGGCGGTCATGCGGATATCGCTGAAATTGCGCAAGTTTCTGTTGCAACCGTTT
TTAACTACTTCCCAACCCGAGAAGATCTGGTCGATGAAGTACTGAACCACGTAGTACGTCAGTTCTCAAACTTCCTGTCA
GATAACATTGATTTAGACCTACACGCACGTGACAATATTGCGAATATCACTAGCGCGATGATTGAGCTAGTCAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAATCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATTTGCAACAAGCATCAACCAGAA
CATTTGACTAACCTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAAGGTGAAGATGAGCTGAA
AAACCTGGTCAGCTCATACCTGGATATGCTTTGTATCTACGAGCGCGGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.079

99.507

0.916
  hapR Vibrio cholerae C6706

71.859

98.03

0.704
  hapR Vibrio cholerae strain A1552

71.859

98.03

0.704

Multiple sequence alignment