Detailed information NTG0968040

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACK2V4_RS04560
• Genome accession: NZ_CP176646
• Coordinates: 958151..959431 (+)
• Length: 426 a.a.
• NCBI ID: WP_005460618.1
• Uniprot ID: Q87R79
• Organism: Vibrio parahaemolyticus strain GTVSS-031
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 953151..964431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2V4_RS04540 (ACK2V4_04540)	-	953715..955517 (-)	1803	WP_025635346.1	ATP-binding protein	-
ACK2V4_RS04545 (ACK2V4_04545)	-	955564..955749 (+)	186	WP_020904052.1	hypothetical protein	-
ACK2V4_RS04550 (ACK2V4_04550)	tig	956043..957347 (+)	1305	WP_005460612.1	trigger factor	-
ACK2V4_RS04555 (ACK2V4_04555)	clpP	957453..958079 (+)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ACK2V4_RS04560 (ACK2V4_04560)	clpX	958151..959431 (+)	1281	WP_005460618.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACK2V4_RS04565 (ACK2V4_04565)	lon	959563..961914 (+)	2352	WP_005493728.1	endopeptidase La	-
ACK2V4_RS04570 (ACK2V4_04570)	-	962107..962379 (+)	273	WP_005382341.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46693.23 Da
• Isoelectric Point: 4.5914

>NTDB_id=968040 ACK2V4_RS04560 WP_005460618.1 958151..959431(+) (clpX) [Vibrio parahaemolyticus strain GTVSS-031]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESEALPTPKQIREHLDDYVI
GQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELD
EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELPSATDVSKVVI
DESVINGESEPLLIYSNADNQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=968040 ACK2V4_RS04560 WP_005460618.1 958151..959431(+) (clpX) [Vibrio parahaemolyticus strain GTVSS-031]
ATGACAGATAAAAGCAAAGAAAGTGGCAGCGGTAAATTGCTGTACTGTTCTTTCTGCGGCAAAAGTCAGCACGAAGTTCG
CAAGCTAATCGCAGGTCCGTCAGTTTACATTTGCGACGAGTGTGTCGACCTATGTAACGATATTATTCGCGAAGAAATCA
AGGATGTTCTCCCTAAGAAAGAATCTGAAGCGTTACCAACGCCAAAACAGATCCGTGAACACCTTGACGACTATGTGATC
GGACAAGATTACGCGAAAAAAGTGCTCGCAGTTGCGGTATATAACCACTACAAGCGTTTACGCAATGGTGATACAACGAG
CGAAGGTGTGGAGCTTGGTAAAAGTAACATCCTTCTAATTGGTCCTACAGGTAGTGGTAAAACGCTGCTTGCTGAGACGC
TAGCTCGATTCTTGGATGTGCCATTCACAATGGCAGACGCAACCACACTAACCGAAGCTGGTTATGTGGGTGAAGACGTT
GAAAACATCATCCAAAAGCTTCTGCAAAAATGTGATTACGATGTAGCGAAGGCTGAACGCGGCATTGTTTACATTGACGA
AATTGACAAAATTTCTCGCAAAGCTGAAAACCCATCAATTACGCGTGACGTATCTGGTGAGGGTGTTCAGCAAGCGCTAT
TGAAACTTATCGAAGGTACGGTTGCTTCAGTTCCACCTCAAGGTGGTCGTAAGCATCCACAGCAAGAATTCCTACAAGTG
GACACGTCTAAGATTCTGTTCATCTGTGGTGGTGCATTTGCTGGTTTAGATAAAGTTATCGAACAGCGTGTAGCTACGGG
TACTGGTATCGGCTTTGGTGCAGAAGTGCGCTCGAAGAACGAAACCAAAACCGTCGGCGAACTGTTTACTCAGGTTGAGC
CAGAAGATCTAGTGAAGTATGGTTTGATTCCAGAATTCATTGGTCGTCTTCCTGTGACAACAACACTGACAGAGCTTGAT
GAAGAAGCGTTGATTCAGATCCTATGTGAACCGAAAAACGCACTGACCAAGCAGTATGCAGCATTGTTTGAGCTAGAAAA
CGCAGAGCTTGAATTCCGTGAAGATGCCCTTCGTGCTATCGCGAAGAAAGCAATGGAACGTAAGACAGGTGCTCGTGGTT
TGCGTTCAATTCTGGAAAGTGTTCTGCTTGAAACCATGTACGAACTGCCATCTGCGACAGATGTAAGTAAAGTTGTGATT
GATGAATCCGTCATCAATGGTGAGTCAGAACCACTGCTTATTTACAGCAATGCCGACAATCAGGCAGCTGGAGCAGAATA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: Q87R79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.853	94.131	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	95.07	0.516