Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYE20_RS19335 Genome accession   NZ_CP150252
Coordinates   3648846..3649535 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL R5-0416     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3643846..3654535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS19300 (NYE20_19300) flgN 3644026..3644508 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NYE20_RS19305 (NYE20_19305) flgM 3644524..3644790 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE20_RS19310 (NYE20_19310) - 3644871..3645290 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYE20_RS19315 (NYE20_19315) comFC 3645364..3646086 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  NYE20_RS19320 (NYE20_19320) comFB 3646050..3646346 (-) 297 WP_003227989.1 late competence protein ComFB -
  NYE20_RS19325 (NYE20_19325) comFA 3646406..3647797 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NYE20_RS19330 (NYE20_19330) - 3647903..3648748 (-) 846 WP_003244125.1 DegV family protein -
  NYE20_RS19335 (NYE20_19335) degU 3648846..3649535 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE20_RS19340 (NYE20_19340) degS 3649618..3650775 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYE20_RS19345 (NYE20_19345) - 3650992..3651645 (+) 654 WP_003227979.1 YigZ family protein -
  NYE20_RS19350 (NYE20_19350) tagV 3651645..3652820 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NYE20_RS19355 (NYE20_19355) - 3652893..3653969 (-) 1077 WP_032726968.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=967910 NYE20_RS19335 WP_003219701.1 3648846..3649535(-) (degU) [Bacillus sp. FSL R5-0416]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=967910 NYE20_RS19335 WP_003219701.1 3648846..3649535(-) (degU) [Bacillus sp. FSL R5-0416]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment