Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE20_RS19315 Genome accession   NZ_CP150252
Coordinates   3645364..3646086 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3640364..3651086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS19280 (NYE20_19280) fliW 3640503..3640934 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NYE20_RS19285 (NYE20_19285) - 3640955..3641530 (-) 576 WP_014481045.1 DUF6470 family protein -
  NYE20_RS19290 (NYE20_19290) flgL 3641577..3642473 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  NYE20_RS19295 (NYE20_19295) flgK 3642484..3644007 (-) 1524 WP_161621181.1 flagellar hook-associated protein FlgK -
  NYE20_RS19300 (NYE20_19300) flgN 3644026..3644508 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NYE20_RS19305 (NYE20_19305) flgM 3644524..3644790 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE20_RS19310 (NYE20_19310) - 3644871..3645290 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYE20_RS19315 (NYE20_19315) comFC 3645364..3646086 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  NYE20_RS19320 (NYE20_19320) comFB 3646050..3646346 (-) 297 WP_003227989.1 late competence protein ComFB -
  NYE20_RS19325 (NYE20_19325) comFA 3646406..3647797 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NYE20_RS19330 (NYE20_19330) - 3647903..3648748 (-) 846 WP_003244125.1 DegV family protein -
  NYE20_RS19335 (NYE20_19335) degU 3648846..3649535 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE20_RS19340 (NYE20_19340) degS 3649618..3650775 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=967908 NYE20_RS19315 WP_014481051.1 3645364..3646086(-) (comFC) [Bacillus sp. FSL R5-0416]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=967908 NYE20_RS19315 WP_014481051.1 3645364..3646086(-) (comFC) [Bacillus sp. FSL R5-0416]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment