Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NYE20_RS13325 Genome accession   NZ_CP150252
Coordinates   2518809..2520539 (-) Length   576 a.a.
NCBI ID   WP_032726123.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2513809..2525539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS13300 (NYE20_13300) - 2513864..2514160 (-) 297 WP_014480225.1 hypothetical protein -
  NYE20_RS13305 (NYE20_13305) - 2514468..2514620 (+) 153 WP_014480226.1 hypothetical protein -
  NYE20_RS13310 (NYE20_13310) - 2514693..2515811 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  NYE20_RS13315 (NYE20_13315) spo0A 2516275..2517078 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NYE20_RS13320 (NYE20_13320) spoIVB 2517354..2518634 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  NYE20_RS13325 (NYE20_13325) recN 2518809..2520539 (-) 1731 WP_032726123.1 DNA repair protein RecN Machinery gene
  NYE20_RS13330 (NYE20_13330) argR 2520572..2521021 (-) 450 WP_021480005.1 arginine repressor ArgR -
  NYE20_RS13335 (NYE20_13335) - 2521119..2521964 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  NYE20_RS13340 (NYE20_13340) dxs 2521961..2523862 (-) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NYE20_RS13345 (NYE20_13345) - 2524037..2524927 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  NYE20_RS13350 (NYE20_13350) - 2524917..2525171 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64564.46 Da        Isoelectric Point: 4.7697

>NTDB_id=967880 NYE20_RS13325 WP_032726123.1 2518809..2520539(-) (recN) [Bacillus sp. FSL R5-0416]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLDVC
AEQGIDVSDEMIVMRRDISTTGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLAGEIHRELKSLYMEKSTFDTEFKV
RTVSRNEEAPIVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=967880 NYE20_RS13325 WP_032726123.1 2518809..2520539(-) (recN) [Bacillus sp. FSL R5-0416]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGATGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGACCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGATGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGTTAGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCTGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCAAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTTTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGGTGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGTGTCACGCAATGAAGAGGCGCCGATTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTTGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCTCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCAGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTTA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGACGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

98.785

100

0.988

Multiple sequence alignment