Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NYE20_RS13315 Genome accession   NZ_CP150252
Coordinates   2516275..2517078 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2511275..2522078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS13290 (NYE20_13290) - 2512414..2513145 (-) 732 WP_101502442.1 glycerophosphodiester phosphodiesterase -
  NYE20_RS13295 (NYE20_13295) - 2513224..2513844 (-) 621 WP_077671425.1 N-acetylmuramoyl-L-alanine amidase -
  NYE20_RS13300 (NYE20_13300) - 2513864..2514160 (-) 297 WP_014480225.1 hypothetical protein -
  NYE20_RS13305 (NYE20_13305) - 2514468..2514620 (+) 153 WP_014480226.1 hypothetical protein -
  NYE20_RS13310 (NYE20_13310) - 2514693..2515811 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  NYE20_RS13315 (NYE20_13315) spo0A 2516275..2517078 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NYE20_RS13320 (NYE20_13320) spoIVB 2517354..2518634 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  NYE20_RS13325 (NYE20_13325) recN 2518809..2520539 (-) 1731 WP_032726123.1 DNA repair protein RecN Machinery gene
  NYE20_RS13330 (NYE20_13330) argR 2520572..2521021 (-) 450 WP_021480005.1 arginine repressor ArgR -
  NYE20_RS13335 (NYE20_13335) - 2521119..2521964 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=967879 NYE20_RS13315 WP_003226427.1 2516275..2517078(-) (spo0A) [Bacillus sp. FSL R5-0416]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=967879 NYE20_RS13315 WP_003226427.1 2516275..2517078(-) (spo0A) [Bacillus sp. FSL R5-0416]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAAAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCACATATAAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTAGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGCTATACCGTC
AGCATGACAAAAGCTAAACCTACCAACAGCGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment