Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYE53_RS15885 Genome accession   NZ_CP150251
Coordinates   3083863..3084507 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3078863..3089507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS15850 (NYE53_15850) - 3080055..3080486 (+) 432 WP_251188280.1 Na(+)/H(+) antiporter subunit B -
  NYE53_RS15855 (NYE53_15855) - 3080486..3080827 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NYE53_RS15860 (NYE53_15860) - 3080820..3082301 (+) 1482 WP_019712488.1 Na+/H+ antiporter subunit D -
  NYE53_RS15865 (NYE53_15865) - 3082307..3082783 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NYE53_RS15870 (NYE53_15870) - 3082783..3083067 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NYE53_RS15875 (NYE53_15875) mnhG 3083051..3083425 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NYE53_RS15880 (NYE53_15880) - 3083464..3083844 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  NYE53_RS15885 (NYE53_15885) comA 3083863..3084507 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NYE53_RS15890 (NYE53_15890) comP 3084588..3086900 (-) 2313 WP_339245592.1 histidine kinase Regulator
  NYE53_RS15895 (NYE53_15895) comX 3086916..3087137 (-) 222 WP_014480704.1 competence pheromone ComX -
  NYE53_RS15900 (NYE53_15900) - 3087139..3088002 (-) 864 WP_339245595.1 polyprenyl synthetase family protein -
  NYE53_RS15905 (NYE53_15905) degQ 3088187..3088327 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NYE53_RS15910 (NYE53_15910) - 3088549..3088611 (+) 63 Protein_3066 hypothetical protein -
  NYE53_RS15915 (NYE53_15915) - 3088789..3089157 (+) 369 WP_339245597.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=967823 NYE53_RS15885 WP_003220716.1 3083863..3084507(-) (comA) [Bacillus sp. FSL R5-0523]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=967823 NYE53_RS15885 WP_003220716.1 3083863..3084507(-) (comA) [Bacillus sp. FSL R5-0523]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTGCTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment