Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NYE53_RS12265 | Genome accession | NZ_CP150251 |
| Coordinates | 2418590..2418925 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. FSL R5-0523 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2413590..2423925
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYE53_RS12245 (NYE53_12245) | gcvT | 2414182..2415270 (-) | 1089 | WP_339244936.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NYE53_RS12250 (NYE53_12250) | - | 2415711..2417384 (+) | 1674 | WP_339244937.1 | SNF2-related protein | - |
| NYE53_RS12255 (NYE53_12255) | - | 2417405..2418199 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| NYE53_RS12260 (NYE53_12260) | sinI | 2418383..2418556 (+) | 174 | WP_339244940.1 | anti-repressor SinI family protein | Regulator |
| NYE53_RS12265 (NYE53_12265) | sinR | 2418590..2418925 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| NYE53_RS12270 (NYE53_12270) | tasA | 2419018..2419803 (-) | 786 | WP_014477324.1 | biofilm matrix protein TasA | - |
| NYE53_RS12275 (NYE53_12275) | - | 2419868..2420440 (-) | 573 | WP_003246088.1 | signal peptidase I | - |
| NYE53_RS12280 (NYE53_12280) | tapA | 2420424..2421185 (-) | 762 | WP_339244943.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NYE53_RS12285 (NYE53_12285) | - | 2421456..2421782 (+) | 327 | WP_339244945.1 | YqzG/YhdC family protein | - |
| NYE53_RS12290 (NYE53_12290) | - | 2421824..2422003 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| NYE53_RS12295 (NYE53_12295) | comGG | 2422075..2422449 (-) | 375 | WP_339244947.1 | ComG operon protein ComGG | Machinery gene |
| NYE53_RS12300 (NYE53_12300) | comGF | 2422450..2422833 (-) | 384 | WP_106073563.1 | ComG operon protein ComGF | Machinery gene |
| NYE53_RS12305 (NYE53_12305) | comGE | 2422859..2423206 (-) | 348 | WP_327829299.1 | ComG operon protein 5 | Machinery gene |
| NYE53_RS12310 (NYE53_12310) | comGD | 2423190..2423621 (-) | 432 | WP_080529538.1 | comG operon protein ComGD | Machinery gene |
| NYE53_RS12315 (NYE53_12315) | comGC | 2423611..2423907 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=967802 NYE53_RS12265 WP_003226345.1 2418590..2418925(+) (sinR) [Bacillus sp. FSL R5-0523]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=967802 NYE53_RS12265 WP_003226345.1 2418590..2418925(+) (sinR) [Bacillus sp. FSL R5-0523]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |