Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYE53_RS08720 Genome accession   NZ_CP150251
Coordinates   1680187..1681080 (+) Length   297 a.a.
NCBI ID   WP_339248213.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1675187..1686080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS08700 (NYE53_08700) - 1675857..1677587 (+) 1731 WP_339248207.1 hypothetical protein -
  NYE53_RS08705 (NYE53_08705) - 1677584..1677865 (+) 282 WP_339248209.1 FlhB-like flagellar biosynthesis protein -
  NYE53_RS08710 (NYE53_08710) sucC 1678038..1679195 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NYE53_RS08715 (NYE53_08715) sucD 1679224..1680126 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  NYE53_RS08720 (NYE53_08720) dprA 1680187..1681080 (+) 894 WP_339248213.1 DNA-processing protein DprA Machinery gene
  NYE53_RS08725 (NYE53_08725) topA 1681268..1683343 (+) 2076 WP_339248216.1 type I DNA topoisomerase -
  NYE53_RS08730 (NYE53_08730) trmFO 1683419..1684726 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE53_RS08735 (NYE53_08735) xerC 1684794..1685708 (+) 915 WP_339248219.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32919.18 Da        Isoelectric Point: 9.8133

>NTDB_id=967794 NYE53_RS08720 WP_339248213.1 1680187..1681080(+) (dprA) [Bacillus sp. FSL R5-0523]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLQHVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=967794 NYE53_RS08720 WP_339248213.1 1680187..1681080(+) (dprA) [Bacillus sp. FSL R5-0523]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCATCTATGTCGCTGACATCACCTGTGCTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCAGCATGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCTGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment