Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKTSN_RS20680 Genome accession   NZ_CP176503
Coordinates   4354701..4356110 (+) Length   469 a.a.
NCBI ID   WP_409470469.1    Uniprot ID   -
Organism   Streptomyces sp. HC307     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4349701..4361110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSN_RS20660 (ACKTSN_20660) - 4349818..4350642 (-) 825 WP_409470466.1 sugar phosphate isomerase/epimerase family protein -
  ACKTSN_RS20665 (ACKTSN_20665) - 4350773..4351705 (-) 933 WP_409470467.1 Ppx/GppA family phosphatase -
  ACKTSN_RS20670 (ACKTSN_20670) - 4351891..4352646 (+) 756 WP_374329546.1 hypothetical protein -
  ACKTSN_RS20675 (ACKTSN_20675) - 4352709..4354457 (-) 1749 WP_409470468.1 BACON domain-containing protein -
  ACKTSN_RS20680 (ACKTSN_20680) radA 4354701..4356110 (+) 1410 WP_409470469.1 DNA repair protein RadA Machinery gene
  ACKTSN_RS20685 (ACKTSN_20685) disA 4356191..4357315 (+) 1125 WP_129799466.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACKTSN_RS20690 (ACKTSN_20690) - 4357444..4358289 (-) 846 WP_409470470.1 hypothetical protein -
  ACKTSN_RS20695 (ACKTSN_20695) - 4358668..4359603 (+) 936 WP_409470471.1 A/G-specific adenine glycosylase -
  ACKTSN_RS20700 (ACKTSN_20700) - 4359860..4360408 (+) 549 WP_409470472.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49641.75 Da        Isoelectric Point: 7.7527

>NTDB_id=967281 ACKTSN_RS20680 WP_409470469.1 4354701..4356110(+) (radA) [Streptomyces sp. HC307]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVLEVADIGDALRVLPRSRHREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=967281 ACKTSN_RS20680 WP_409470469.1 4354701..4356110(+) (radA) [Streptomyces sp. HC307]
ATGGCTGCCCGTACGAAGACCACGAAGGACCGCCCGTCCTACCGCTGCACCGAATGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGGTCGAGGAATACGGCACGCCCGCCGTACGCACGACCACACCCGGCC
GCGTCACCACCTCCGCCCTGCCCATCGGCCAGGTCGACGGTCGCCAGGCCACCGCCCGCCCGACCGGCGTCCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGCGCGGTGGTGCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACCCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGTGACGAACACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCGGCGCCATCGACGACCACCTCTATCTCGCCGCCGAGACCGATCTGGCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCACTGCTCATCCTCGACTCGGTACAGACGGTCGCCTCCCCGGAGATCGACGGCGC
CCCAGGCGGCATGGCCCAGGTCCGCGAAGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGGGGCATGTCCACGCTCC
TTGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTCGTCGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGTCTGCGCCTCGTACGCGGCGTCAAGAACCGCTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGACTCGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGGGCCGAACCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCACTCACGGTCGACTCGCAGATC
CCCTCCCCACGCCGCACGACATCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAACAGCGCGGCCG
CATCAGCGCCCTGGGCAAACGAGACATCTACTCCGCAACGGTCGGCGGAGTGAAGCTGTCCGAACCGGCCGCCGACCTCG
CCGTCGCCCTCGCACTGGCGTCGGCGGCCAGTGACACCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAGGTCGGCCTC
GCAGGCGAGGTCAGACGGGTCACCGGCGTGCAGCGCCGGCTCGCGGAGGCGCACCGCCTGGGCTTCACGCATGCGCTCGT
GCCGGGCGATCCGGGCAAGGTCCCTGCAGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGAGGGTCCTCC
CCCGCTCCCGTCACCGAGAGGCCCCCCGGGACGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.43

95.736

0.416
  radA Streptococcus mitis NCTC 12261

43.43

95.736

0.416
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414