Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MKY99_RS25980 Genome accession   NZ_CP150238
Coordinates   5898316..5900073 (+) Length   585 a.a.
NCBI ID   WP_339267148.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0470     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5893316..5905073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY99_RS25955 (MKY99_25955) ascB 5893330..5894742 (-) 1413 WP_339267140.1 6-phospho-beta-glucosidase -
  MKY99_RS25960 (MKY99_25960) - 5894856..5895824 (+) 969 WP_339267142.1 LacI family DNA-binding transcriptional regulator -
  MKY99_RS25965 (MKY99_25965) - 5895919..5896590 (+) 672 WP_042191734.1 response regulator transcription factor -
  MKY99_RS25970 (MKY99_25970) - 5896587..5897666 (+) 1080 WP_339267144.1 HAMP domain-containing sensor histidine kinase -
  MKY99_RS25975 (MKY99_25975) - 5897663..5898148 (+) 486 WP_339267146.1 GNAT family N-acetyltransferase -
  MKY99_RS25980 (MKY99_25980) rcrP 5898316..5900073 (+) 1758 WP_339267148.1 ABC transporter ATP-binding protein Regulator
  MKY99_RS25985 (MKY99_25985) rcrQ 5900073..5901833 (+) 1761 WP_339267149.1 ABC transporter ATP-binding protein Regulator
  MKY99_RS25990 (MKY99_25990) - 5901905..5902693 (-) 789 WP_339267151.1 RNA methyltransferase -
  MKY99_RS25995 (MKY99_25995) - 5902954..5903613 (-) 660 WP_076285312.1 TrkA family potassium uptake protein -
  MKY99_RS26000 (MKY99_26000) - 5903750..5903986 (+) 237 WP_042191747.1 small acid-soluble spore protein SspI -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64511.91 Da        Isoelectric Point: 5.0775

>NTDB_id=967282 MKY99_RS25980 WP_339267148.1 5898316..5900073(+) (rcrP) [Paenibacillus sp. FSL R5-0470]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPDYMSDITRLIQTPGSEMNEILVAGGWMLLCALGSLATSVVVAGIAA
RIAADLSARLRSKLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAILKISGKSWEWTLT
TGAAVALLVVIVAVCIVLVLPKFKKLQLLTDNLNRVSRENLNGLRVIRAYNAEEYQEQKFAVANNELTSTNLFANNVMTL
LMPSITLIMSGLSLSIYWVGAVLIQAAEGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILLPRAQVSAKRINEVLETV
PSLKNGSVTQFPVKREDEIEFRGVSFKYPDAEEYVLENISFTAKQGETVAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVREYDQQALRNKMGYVSQKAVLFGGTVSSNIAFGENGSGQVLSSDIVDAVYTSQSSEFVEKLEGNYDAHIAQGGTNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELRKDAHDSTMLIVAQRIGTIKDADKIIVLEAGRIAGMGT
HDELMQSCDVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=967282 MKY99_RS25980 WP_339267148.1 5898316..5900073(+) (rcrP) [Paenibacillus sp. FSL R5-0470]
ATGTTGAAATTACTCAAGAATCTGGAACCCAAAGAATGGTTCTTATTCGGTATCAGTCTCATGTTCATTATCGCTCAAGT
CTGGCTGGATTTAGAACTGCCTGACTACATGAGTGATATTACCCGGCTGATCCAGACACCAGGGAGCGAAATGAATGAAA
TCCTTGTCGCAGGCGGTTGGATGCTGCTCTGTGCTCTTGGCAGTCTGGCGACCTCGGTTGTTGTAGCGGGCATTGCTGCA
AGAATAGCAGCCGATTTGTCTGCAAGATTGCGTTCCAAATTGTTCGATAAGGTACAATCCTTTTCGATGGAGGAGATCAG
TAACTTCTCAACAGCCAGTCTAATTACCCGTTCCACGAATGACATCACGCAAGTACAAATGCTGATTGTGATCGGCTTAC
AGCTACTTGTGAAAGCACCCATCCTCGCAGTGTGGGCGATACTCAAGATTTCGGGCAAAAGCTGGGAGTGGACTCTTACG
ACAGGTGCCGCGGTCGCATTGCTAGTAGTTATTGTCGCAGTCTGTATCGTGCTCGTCCTGCCTAAATTTAAAAAGCTGCA
GCTGCTTACAGATAATCTGAATCGTGTATCCAGAGAGAATCTTAATGGTCTTCGTGTCATCCGGGCGTATAATGCCGAGG
AATATCAAGAACAGAAGTTCGCTGTAGCTAACAACGAGCTTACCAGTACCAACCTATTTGCCAACAATGTAATGACCCTA
TTGATGCCGAGTATTACTTTGATTATGAGTGGACTCAGTCTCTCCATCTATTGGGTGGGTGCAGTGCTCATTCAAGCAGC
CGAGGGTACTGCCAAGATGGGCTTGTTCTCAGATATGATCGTATTCTCATCTTATGCCATGCAAGTGGTTATGGCCTTTA
TGATGCTGATTATGATCTTTATTCTACTGCCCCGTGCTCAAGTATCGGCTAAACGTATCAATGAAGTGCTAGAAACAGTA
CCTAGCTTGAAGAATGGATCAGTAACTCAATTCCCTGTGAAGCGAGAAGATGAAATTGAATTCAGGGGGGTTAGCTTCAA
ATATCCAGATGCAGAGGAATATGTGTTGGAGAACATCAGCTTCACGGCCAAGCAGGGGGAGACGGTTGCTTTTATCGGAT
CTACAGGCTGCGGGAAAAGTACACTTGTTAACCTCATTCCCCGTTTCTATGATGCTACAGAAGGCGAAGTGCTGGTAAAT
GGTATCAATGTCAGAGAATACGACCAGCAAGCGCTTCGGAATAAAATGGGCTATGTCTCTCAGAAGGCTGTTCTATTTGG
TGGAACAGTGTCCTCCAATATTGCATTTGGTGAGAACGGATCCGGTCAGGTCCTCAGTTCAGATATTGTAGATGCGGTGT
ACACTTCCCAATCCTCTGAATTTGTAGAAAAGCTAGAGGGGAACTATGATGCCCATATCGCCCAAGGCGGAACGAATCTG
TCTGGCGGGCAAAAACAGCGGCTGTCGATTGCCAGAGCGATTGCCCGGCGTCCAGAAATATTAATCTTTGACGATTCTTT
CTCCGCGCTTGACTATAAGACTGACCGCAAACTGCGCAGTGAGCTTAGGAAAGACGCGCATGATTCAACGATGCTGATCG
TTGCACAGCGCATTGGTACGATAAAAGATGCCGACAAGATCATTGTGCTGGAAGCCGGACGAATCGCAGGCATGGGAACG
CATGACGAACTAATGCAGTCCTGCGACGTCTATCAGGAAATTGCTTATTCTCAGCTTACGAAGGAGGAGCTTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.349

100

0.533

Multiple sequence alignment