Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MKY99_RS25985 Genome accession   NZ_CP150238
Coordinates   5900073..5901833 (+) Length   586 a.a.
NCBI ID   WP_339267149.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0470     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5895073..5906833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY99_RS25965 (MKY99_25965) - 5895919..5896590 (+) 672 WP_042191734.1 response regulator transcription factor -
  MKY99_RS25970 (MKY99_25970) - 5896587..5897666 (+) 1080 WP_339267144.1 HAMP domain-containing sensor histidine kinase -
  MKY99_RS25975 (MKY99_25975) - 5897663..5898148 (+) 486 WP_339267146.1 GNAT family N-acetyltransferase -
  MKY99_RS25980 (MKY99_25980) rcrP 5898316..5900073 (+) 1758 WP_339267148.1 ABC transporter ATP-binding protein Regulator
  MKY99_RS25985 (MKY99_25985) rcrQ 5900073..5901833 (+) 1761 WP_339267149.1 ABC transporter ATP-binding protein Regulator
  MKY99_RS25990 (MKY99_25990) - 5901905..5902693 (-) 789 WP_339267151.1 RNA methyltransferase -
  MKY99_RS25995 (MKY99_25995) - 5902954..5903613 (-) 660 WP_076285312.1 TrkA family potassium uptake protein -
  MKY99_RS26000 (MKY99_26000) - 5903750..5903986 (+) 237 WP_042191747.1 small acid-soluble spore protein SspI -
  MKY99_RS26005 (MKY99_26005) - 5904085..5905683 (-) 1599 WP_042191749.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64073.39 Da        Isoelectric Point: 7.7279

>NTDB_id=967283 MKY99_RS25985 WP_339267149.1 5900073..5901833(+) (rcrQ) [Paenibacillus sp. FSL R5-0470]
MKTKNKGQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLFGPDKLSEITDKITAGLAGSIDMDGITTIGITLVVIYGVG
ALLSLSQGLIMSIITQKVSKKLRTDLAHKMNKLPISYYNKSATGDILSRVTNDVDTIGQSMNQSIGNVVTALAMFVGSIV
MMLKTNVIMTLTAIVATIIGFGLMVVIMKKSQKYFASQQEYLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQGLK
NSAFKAQFLSGLMPPLMGFIGNLGFVAVCIVGGVLAMNGTISFGVIVAFIMYVRYFTQPLSQIAQAAQSLQAASAAGGRV
FEFLEAEEMEDESHKENTLPTAKGKVKFDQVQFAYETSEKLIINNFSTDVKPGQKVAIVGPTGAGKTTLVNLLIRFNELT
GGEIYIDDTPISSLTRKNIHDLFCMVLQDTWLFEGTIKENLIYNQQNITDEKLIEACKSVGLHRFIKSLSDGYNTVLNDK
VNLSAGQKQQMTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHAELLSQNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=967283 MKY99_RS25985 WP_339267149.1 5900073..5901833(+) (rcrQ) [Paenibacillus sp. FSL R5-0470]
ATGAAAACCAAAAATAAAGGCCAGAATACATGGAGCAAGCTGCTCCGCTACTGCCGTAAATATGTTCCGGTTATTGTGAT
TGCGCTAATCTGCGCGGCAGCTGGAACGGTGCTCACGTTATTCGGTCCGGACAAACTCTCCGAGATCACCGACAAAATTA
CAGCTGGTCTTGCCGGCAGCATCGATATGGACGGCATTACTACCATTGGTATTACCCTCGTCGTAATTTACGGCGTCGGT
GCGTTGTTGTCACTCTCACAAGGCTTGATCATGTCGATTATTACCCAGAAGGTCTCGAAGAAATTAAGAACTGATCTGGC
TCATAAAATGAACAAACTTCCAATCTCCTACTATAATAAATCGGCCACAGGTGATATTTTATCCCGGGTAACGAATGATG
TAGATACCATCGGGCAATCGATGAATCAGAGTATTGGTAATGTCGTAACCGCCTTAGCTATGTTCGTCGGTTCGATCGTC
ATGATGCTGAAGACCAATGTAATTATGACCCTTACCGCTATCGTGGCAACGATCATCGGCTTTGGCCTTATGGTGGTCAT
TATGAAGAAATCGCAGAAATATTTTGCTAGCCAGCAGGAGTATTTAGGTAAAATCAACGGTCATGTCGAAGAAGTGTACA
CAGGACATAATGTAGTTAAAGCGTATAATGGCGAAGCGCAGATGCGCACTACCTTCCAGGAATTAAATCAGGGACTGAAG
AACAGCGCCTTTAAAGCGCAATTCCTCTCTGGGCTGATGCCACCCCTGATGGGCTTTATTGGTAATCTAGGATTCGTTGC
CGTCTGTATCGTTGGAGGTGTACTCGCCATGAACGGTACGATTTCATTTGGGGTTATCGTCGCCTTCATTATGTATGTAC
GTTACTTTACCCAGCCGTTGTCCCAGATTGCCCAGGCCGCGCAGAGCCTGCAAGCTGCATCTGCAGCTGGCGGACGCGTG
TTCGAATTTCTGGAGGCTGAGGAAATGGAAGACGAGAGCCACAAAGAGAACACACTGCCAACTGCTAAAGGTAAAGTAAA
ATTTGACCAAGTACAATTTGCGTATGAGACTTCAGAAAAACTGATTATCAATAACTTCTCGACAGATGTAAAACCTGGGC
AAAAAGTGGCGATCGTTGGTCCTACCGGCGCAGGCAAAACTACGCTGGTCAATCTGCTCATCCGGTTCAACGAATTAACG
GGCGGAGAAATCTACATCGATGATACGCCGATCAGCAGCCTTACGAGAAAGAACATTCATGATCTGTTCTGTATGGTCCT
GCAGGATACCTGGCTGTTTGAGGGTACCATCAAAGAGAACCTGATTTACAATCAGCAGAACATTACAGACGAGAAGCTTA
TAGAGGCTTGCAAGTCCGTTGGCCTGCACCGCTTCATTAAATCCTTAAGTGACGGATACAACACCGTACTGAACGATAAA
GTTAATCTGTCCGCCGGCCAAAAGCAGCAGATGACCATCGCCCGCGCGATGCTAAAGGATGCGCCGATGCTCATTCTTGA
TGAAGCTACAAGCTCGGTGGATACCCGTACAGAGCTGCTGATTCAGCAGGCGATGGATAAGCTTATGGAAGGCAGAACCT
CTTTCGTTATCGCACACCGACTCTCAACGATCAAGAATGCTGATGTGATTCTGGTCCTGAAGGACGGCGATATCTTGGAA
AGCGGCAGCCACGCGGAATTGCTGTCTCAGAACGGATTCTATGCAGAGCTGTACAACAGCCAATTTGAGCAGGCTTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.143

99.147

0.567

Multiple sequence alignment